PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01163.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 191aa MW: 20610 Da PI: 4.7916

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01163.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	104.2	9.1e-33	21	111	7	97
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +P a v+rim++ P n+ki+ dake v++c +ef + + a + c+r+kr t++gddl++a+ +lGf+dyv pl +yl++yre+eg++ Pahal.D01163.1 21 RIPRATVARIMRHGSPPNSKITGDAKEAVDNCLVEFCAVFIAAAVEECRRDKRTTVTGDDLIFAMRNLGFDDYVRPLALYLRRYREIEGNR 111 6899********************************99999*******************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-30	12	119	IPR009072	Histone-fold
SuperFamily	SSF47113	9.78E-27	18	115	IPR009072	Histone-fold
Pfam	PF00808	7.0E-15	21	85	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDKNQANNHQ DGTDQAPEEL RIPRATVARI MRHGSPPNSK ITGDAKEAVD NCLVEFCAVF 60 IAAAVEECRR DKRTTVTGDD LIFAMRNLGF DDYVRPLALY LRRYREIEGN RPRARHSSMA 120 ALDPTAPAVG AEVQQQQPPP GLNLQLGPPP VRDVTELGPH ADVYAVWRAA AAAAAGTSQA 180 PGGADDEDEE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	4e-26	18	106	5	93	NF-YB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813092.1	1e-131	nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A3L6PHB2	1e-125	A0A3L6PHB2_PANMI; Uncharacterized protein
STRING	Pavir.Da01559.1.p	1e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14056	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	8e-34	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Pahal.D01163.1