PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01194.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 106aa    MW: 11967.7 Da    PI: 12.6316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01194.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.32.1e-092457242
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeA 42
                    +ykGVr+++ + +W+AeI        + r++lg+  +ae A
  Pahal.D01194.1 24 RYKGVRRRS-WSKWAAEIVK------SVRIWLGTLSSAEAA 57
                    6*****887.*******755......7**********6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.8392460IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-112460IPR001471AP2/ERF domain
SMARTSM003808.4E-42486IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-92462IPR016177DNA-binding domain
PfamPF008473.8E-62457IPR001471AP2/ERF domain
PRINTSPR003673.5E-72536IPR001471AP2/ERF domain
PRINTSPR003673.5E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MKSARNQQHQ QAAPMPNSRR KTARYKGVRR RSWSKWAAEI VKSVRIWLGT LSSAEAATRT  60
RLRRPAAGQQ RGRAACALPR RQSRPSPRAA RWYGERRDLT GGSLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11830RRKTARYKGVRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.15e-15ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3L6SDZ04e-14A0A3L6SDZ0_PANMI; Uncharacterized protein
STRINGPavir.Bb03080.1.p4e-18(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5683422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-10ERF family protein