PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01227.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 408aa    MW: 43880 Da    PI: 5.2937
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01227.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07546540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+ ++e++   +C+++   lC +C  + H+       Ht++
  Pahal.D01227.3  5 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 46
                    6*****************************657888889876 PP
2zf-B_box24.84.5e-084889540
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+++ ++++++ C   +  lC++C  ++H        H+++
  Pahal.D01227.3 48 LCDRCASQPATIRCLVENASLCQNCDWNGHTAgssaagHKRQ 89
                    7*****************************557788888876 PP
3CCT64.43.3e-22350393144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Pahal.D01227.3 350 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                     899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-12148IPR000315B-box-type zinc finger
PROSITE profilePS501199.826148IPR000315B-box-type zinc finger
CDDcd000216.92E-8548No hitNo description
PROSITE profilePS501199.034491IPR000315B-box-type zinc finger
CDDcd000214.17E-54891No hitNo description
PfamPF006431.8E-54890IPR000315B-box-type zinc finger
SMARTSM003360.314991IPR000315B-box-type zinc finger
PfamPF062035.6E-17350392IPR010402CCT domain
PROSITE profilePS5101715.477350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MMGALCDFCG EQRSMVYCRS DAASLCLSCD RNVHSANALS RRHTRTLLCD RCASQPATIR  60
CLVENASLCQ NCDWNGHTAG SSAAGHKRQA INCYSGCPSS AELSRIWSFV SDIPNVAPEP  120
NCEQGISMMS ISDSGVSNQD NAAGDNNLFD IASATLMSDL DTCDKPLVGS SSGAGVNLLP  180
LATDQAAGTV DSTTTKVPYT PDKDMFSKDS IYEDFCVDDV DLAFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FKVKELPAGD PTEQPKLMQP VNSNAVSADS GMSNPGVKGG SSVCIPPRQA  300
RLSLSLSFSG LTGESSAGDH QDCVVSSLLL MGEPPWQPPG PEGTIAGGSR DSAITRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LSQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811897.10.0zinc finger protein CONSTANS-LIKE 9-like isoform X3
SwissprotQ9SSE51e-124COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2S3HJK00.0A0A2S3HJK0_9POAL; Uncharacterized protein
STRINGGRMZM2G013398_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-84B-box type zinc finger protein with CCT domain