PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01489.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 130aa    MW: 14128.1 Da    PI: 7.7225
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01489.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like482.7e-1522502755
         G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55
                    AtPk+ lelm+vk+Ltl+hvkSHLQ+YR+
  Pahal.D01489.1 22 ATPKSALELMNVKDLTLAHVKSHLQMYRT 50
                    9***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-52150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-132250IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-112250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MHVHILGSET SLLCFLLHLL GATPKSALEL MNVKDLTLAH VKSHLQMYRT VKGTDRSCVA  60
GLGQQARGMA FLRRGAGEVD GFDVFNSSSS VNTTTTCVHF HSFVEISGYS GLFDDHVHVF  120
HNSAYGYVK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616591e-49AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805465.18e-39uncharacterized protein LOC112884302
SwissprotQ9FJV54e-14KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A2T8JCU42e-66A0A2T8JCU4_9POAL; Uncharacterized protein
STRINGPavir.J18135.1.p8e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.25e-16G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]