PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01490.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 116aa MW: 12608.6 Da PI: 9.8279

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01490.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	48.3	2.2e-15	22	50	27	55
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk+ lelm+vk+Ltl+hvkSHLQ+YR+ Pahal.D01490.1 22 ATPKSALELMNVKDLTLAHVKSHLQMYRT 50 9***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.85E-6	21	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-13	22	50	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-11	22	50	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MHVHILGSET SLLCFLLHLL GATPKSALEL MNVKDLTLAH VKSHLQMYRT VKGTDRSCVA 60 GLGQQARGMA FLRRGAGEVD GFDVFNSSRS VNTTTTFNNY TNTARLAHCI SFLPK*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY661659	1e-49	AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805465.1	2e-40	uncharacterized protein LOC112884302
TrEMBL	A0A2T7EIQ0	3e-49	A0A2T7EIQ0_9POAL; Uncharacterized protein
STRING	Pavir.J18135.1.p	2e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-16	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.D01490.1