PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01587.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 168aa MW: 17442.8 Da PI: 7.9082

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01587.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.7	2.6e-31	59	124	8	73
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 + ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Pahal.D01587.1 59 SADRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAP 124 68********************************************************77776333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-26	59	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.47	59	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSSSSELVLY NLVPAPQTLN PPQPHAAAAV SGDLSISTAV APPPQEPLRV RARHPVGSSA 60 DRHAKVAGRG RRVRIPAMVA ARVFQLTREL GHRTDGETIE WLLRQAEPSI IAATGTGVTP 120 EEAPPAHPVA ATASLMPVPY YTALLMQPPP TADSASGSGI AAQENNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823176.1	1e-115	transcription factor PCF1-like
Swissprot	O23875	4e-55	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A2S3I5A2	1e-114	A0A2S3I5A2_9POAL; Uncharacterized protein
STRING	Pavir.Ga02405.1.p	6e-91	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-31	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.D01587.1