PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01684.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 21403.7 Da PI: 9.672

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01684.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.2	9.1e-18	21	63	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 rie+k +r+vt++kR+ gi+KK +EL LC+a vav ifs++ Pahal.D01684.1 21 RIEDKEKRHVTLCKRKGGIFKKCSELQLLCGAHVAVAIFSKKE 63 8***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.773	12	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.5E-20	12	71	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.81E-19	13	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-13	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.7E-18	21	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-13	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-13	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MTMVKPGKKT SKGRQKIEIR RIEDKEKRHV TLCKRKGGIF KKCSELQLLC GAHVAVAIFS 60 KKEEQPQPPT AGGRPSRGGN VFAMGTPSDD HVLRRFAPLP GDEVGLLLPA GADEEAEALV 120 KAEKDWMRAV GEKVQQAAEA AGKPFWWEAD VEALGEAELP EFARALQRIR EIVQREADKL 180 RTSAPPAVAP AAWHP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813488.1	1e-139	agamous-like MADS-box protein AGL62
TrEMBL	A0A2S3HJ80	1e-138	A0A2S3HJ80_9POAL; Uncharacterized protein
STRING	Si007275m	2e-88	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2833	30	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	7e-20	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Pahal.D01684.1