PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01759.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 185aa    MW: 20399.8 Da    PI: 10.996
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01759.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.91.6e-1191149462
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      +r rr ++NRe+ArrsR RK+ ++ +L   ++ L + N++L ++l++    +++++ +
  Pahal.D01759.1  91 ERRRRRTASNRESARRSRVRKQRQLSQLWAQAAHLRGDNRDLLDRLNRAIRDCDRVRRD 149
                     5899*******************************************998888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-988152IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-689146No hitNo description
PROSITE profilePS5021710.26690153IPR004827Basic-leucine zipper domain
PfamPF001704.5E-990147IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.22E-992140No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
CDDcd147026.54E-1399144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MYPGEVASVV LPYLPTAAAA AFGFGPHYHP PAGDHFLFPG ISTDLLTLPY AATAAHCQQH  60
PAGHQPFLDH APGPHDEAAG GVERRRQLAE ERRRRRTASN RESARRSRVR KQRQLSQLWA  120
QAAHLRGDNR DLLDRLNRAI RDCDRVRRDN ARLGRERAGL QRRLHELAAG GDDDGSSRIA  180
ATAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196RRRRRT
2104110RRSRVRK
3104111RRSRVRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813468.11e-130basic leucine zipper 8-like
TrEMBLA0A2S3HJ481e-128A0A2S3HJ48_9POAL; Uncharacterized protein
TrEMBLA0A2T7DZ271e-128A0A2T7DZ27_9POAL; Uncharacterized protein
STRINGPavir.Db01631.1.p2e-81(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126