PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01839.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 509aa    MW: 55596.6 Da    PI: 7.0272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01839.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.8e-12133158227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C f++rt tCkyG+ CkF H++
  Pahal.D01839.1 133 GEKDCAFYMRTRTCKYGEACKFDHPQ 158
                     7889********************97 PP
2zf-CCCH24.54.6e-08182208127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f+++  C++ ++CkF+H++
  Pahal.D01839.1 182 PGEPDCPYFMKSNSCRFKSKCKFNHPK 208
                     5789*********************96 PP
3zf-CCCH38.81.5e-12236261227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+a+tG Ck+G++CkF+H++
  Pahal.D01839.1 236 FEPVCSFYAKTGKCKFGAKCKFNHPK 261
                     6899********************96 PP
4zf-CCCH41.13e-13315340126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+F+H+
  Pahal.D01839.1 315 PGEVDCSFYMKTGSCKYGSTCRFNHP 340
                     57899********************9 PP
5zf-CCCH34.14.5e-11397421226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C+f+++tG Cky  +CkF+H+
  Pahal.D01839.1 397 GETVCDFYMKTGSCKYSQKCKFHHP 421
                     6789********************8 PP
6zf-CCCH36.39.3e-12453476427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e+C f++r+GtC+yG  CkF H+p
  Pahal.D01839.1 453 EICAFYMRSGTCRYGVHCKFDHPP 476
                     89********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.413131159IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-4131158IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371181209IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038181208IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-6183208IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5186212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094234262IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5234261IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-10236261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5238262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-6239260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896314342IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7314341IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10316340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6318342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4320339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6393423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845395423IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5395422IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-9397421IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5400421IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112449477IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5449476IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6451477IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9453476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5453474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSDPLYPYSR GAFPGGDSEP PPPPPPRYSD FEVDLIAARY AGAPPPPPYP SADASAFDSH  60
VGAFDSHFGA FDSHVGAFDS HVGAGRSAGA LYHQSFMGSH NTIGQNEALY SSNTMAKRPR  120
LESSLPLYPQ RPGEKDCAFY MRTRTCKYGE ACKFDHPQWV PEGGVPNWKE VPNVEDSYPE  180
RPGEPDCPYF MKSNSCRFKS KCKFNHPKEK VNALWAGTDN RESLIADSAI LPVRPFEPVC  240
SFYAKTGKCK FGAKCKFNHP KDVEIAPVIA KETIYTATTD AAAHIGTADS SVPAKTHAPT  300
ASAEAHNAKG LPIRPGEVDC SFYMKTGSCK YGSTCRFNHP YRPALMAPLD HDTLPTLAPI  360
VSAAVLNPAA NIMQSFDFHA THMPIEPVPI IYPQRPGETV CDFYMKTGSC KYSQKCKFHH  420
PINRSAPGAN ENGDPQQPVT LTLAGLPRRE DAEICAFYMR SGTCRYGVHC KFDHPPPQEA  480
IAKLQATGKE GENENEGEEK EGLSVVLR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815023.10.0zinc finger CCCH domain-containing protein 8-like isoform X3
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2S3HTX70.0A0A2S3HTX7_9POAL; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-142floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]