PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01839.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 319aa    MW: 34795.7 Da    PI: 8.2126
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01839.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.4e-134671227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C+f+a+tG Ck+G++CkF+H++
  Pahal.D01839.2 46 FEPVCSFYAKTGKCKFGAKCKFNHPK 71
                    6899********************96 PP
2zf-CCCH41.91.7e-13125150126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+F+H+
  Pahal.D01839.2 125 PGEVDCSFYMKTGSCKYGSTCRFNHP 150
                     57899********************9 PP
3zf-CCCH34.92.5e-11207231226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C+f+++tG Cky  +CkF+H+
  Pahal.D01839.2 207 GETVCDFYMKTGSCKYSQKCKFHHP 231
                     6789********************8 PP
4zf-CCCH37.15.2e-12263286427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e+C f++r+GtC+yG  CkF H+p
  Pahal.D01839.2 263 EICAFYMRSGTCRYGVHCKFDHPP 286
                     89********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.826119IPR000571Zinc finger, CCCH-type
PfamPF146080.29517No hitNo description
PROSITE profilePS5010315.0944472IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-54471IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-104671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-64872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-64970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896124152IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7124151IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-11126150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6128152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5130149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7203233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845205233IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5205232IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9207231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5210231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112259287IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5259286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6261287IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9263286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5263284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKSNSCRFKS KCKFNHPKEK VNALWAGTDN RESLIADSAI LPVRPFEPVC SFYAKTGKCK  60
FGAKCKFNHP KDVEIAPVIA KETIYTATTD AAAHIGTADS SVPAKTHAPT ASAEAHNAKG  120
LPIRPGEVDC SFYMKTGSCK YGSTCRFNHP YRPALMAPLD HDTLPTLAPI VSAAVLNPAA  180
NIMQSFDFHA THMPIEPVPI IYPQRPGETV CDFYMKTGSC KYSQKCKFHH PINRSAPGAN  240
ENGDPQQPVT LTLAGLPRRE DAEICAFYMR SGTCRYGVHC KFDHPPPQEA IAKLQATGKE  300
GENENEGEEK EGLSVVLR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815027.10.0zinc finger CCCH domain-containing protein 8-like isoform X6
SwissprotQ5ZDJ61e-134C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2S3HTX70.0A0A2S3HTX7_9POAL; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-84floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]