PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01839.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 505aa    MW: 55026.9 Da    PI: 6.9278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01839.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.7e-12133158227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C f++rt tCkyG+ CkF H++
  Pahal.D01839.5 133 GEKDCAFYMRTRTCKYGEACKFDHPQ 158
                     7889********************97 PP
2zf-CCCH38.91.5e-12232257227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+a+tG Ck+G++CkF+H++
  Pahal.D01839.5 232 FEPVCSFYAKTGKCKFGAKCKFNHPK 257
                     6899********************96 PP
3zf-CCCH41.13e-13311336126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+F+H+
  Pahal.D01839.5 311 PGEVDCSFYMKTGSCKYGSTCRFNHP 336
                     57899********************9 PP
4zf-CCCH34.24.4e-11393417226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C+f+++tG Cky  +CkF+H+
  Pahal.D01839.5 393 GETVCDFYMKTGSCKYSQKCKFHHP 417
                     6789********************8 PP
5zf-CCCH36.39.3e-12449472427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e+C f++r+GtC+yG  CkF H+p
  Pahal.D01839.5 449 EICAFYMRSGTCRYGVHCKFDHPP 472
                     89********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.7E-4131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413131159IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003564.7181204IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.934190205IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094230258IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10232257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5234258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6235256IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896310338IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10312336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6314338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4316335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-6389419IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5391418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845391419IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9393417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5396417IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5445472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112445473IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6447473IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9449472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5449470IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MSDPLYPYSR GAFPGGDSEP PPPPPPRYSD FEVDLIAARY AGAPPPPPYP SADASAFDSH  60
VGAFDSHFGA FDSHVGAFDS HVGAGRSAGA LYHQSFMGSH NTIGQNEALY SSNTMAKRPR  120
LESSLPLYPQ RPGEKDCAFY MRTRTCKYGE ACKFDHPQWV PEGGVPNWKE VPNVEDSYPE  180
RPGEPDCPSN SCRFKSKCKF NHPKEKVNAL WAGTDNRESL IADSAILPVR PFEPVCSFYA  240
KTGKCKFGAK CKFNHPKDVE IAPVIAKETI YTATTDAAAH IGTADSSVPA KTHAPTASAE  300
AHNAKGLPIR PGEVDCSFYM KTGSCKYGST CRFNHPYRPA LMAPLDHDTL PTLAPIVSAA  360
VLNPAANIMQ SFDFHATHMP IEPVPIIYPQ RPGETVCDFY MKTGSCKYSQ KCKFHHPINR  420
SAPGANENGD PQQPVTLTLA GLPRREDAEI CAFYMRSGTC RYGVHCKFDH PPPQEAIAKL  480
QATGKEGENE NEGEEKEGLS VVLR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815024.10.0zinc finger CCCH domain-containing protein 8-like isoform X4
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2S3HUG50.0A0A2S3HUG5_9POAL; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-138floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]