PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01839.8
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 355aa    MW: 38881.5 Da    PI: 8.5326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01839.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.6e-1382107227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+a+tG Ck+G++CkF+H++
  Pahal.D01839.8  82 FEPVCSFYAKTGKCKFGAKCKFNHPK 107
                     6899********************96 PP
2zf-CCCH41.72e-13161186126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+F+H+
  Pahal.D01839.8 161 PGEVDCSFYMKTGSCKYGSTCRFNHP 186
                     57899********************9 PP
3zf-CCCH34.82.9e-11243267226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C+f+++tG Cky  +CkF+H+
  Pahal.D01839.8 243 GETVCDFYMKTGSCKYSQKCKFHHP 267
                     6789********************8 PP
4zf-CCCH36.96e-12299322427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e+C f++r+GtC+yG  CkF H+p
  Pahal.D01839.8 299 EICAFYMRSGTCRYGVHCKFDHPP 322
                     89********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.7284255IPR000571Zinc finger, CCCH-type
PfamPF146080.0824253No hitNo description
SMARTSM003563.7E-580107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.09480108IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-1082107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-684108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-685106IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896160188IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10162186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6164188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4166185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7239269IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845241269IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9243267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5246267IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112295323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6297323IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9299322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5299320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MERPANLTIH NGFQRVGFQT GKRSRTLKIL ILSDQGNQIV LCRFKSKCKF NHPKEKVNAL  60
WAGTDNRESL IADSAILPVR PFEPVCSFYA KTGKCKFGAK CKFNHPKDVE IAPVIAKETI  120
YTATTDAAAH IGTADSSVPA KTHAPTASAE AHNAKGLPIR PGEVDCSFYM KTGSCKYGST  180
CRFNHPYRPA LMAPLDHDTL PTLAPIVSAA VLNPAANIMQ SFDFHATHMP IEPVPIIYPQ  240
RPGETVCDFY MKTGSCKYSQ KCKFHHPINR SAPGANENGD PQQPVTLTLA GLPRREDAEI  300
CAFYMRSGTC RYGVHCKFDH PPPQEAIAKL QATGKEGENE NEGEEKEGLS VVLR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815026.10.0zinc finger CCCH domain-containing protein 8-like isoform X5
SwissprotQ5ZDJ61e-132C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2S3HU040.0A0A2S3HU04_9POAL; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-83floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]