PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01904.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 178aa MW: 19556.5 Da PI: 9.1888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01904.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00064	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+k s++ ++ +H ++H Pahal.D01904.1 37 FVCLVCTKESSSQQHMAVHCKKH 59 89********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEDQTWEAYF TDTPPPEPSL TKIITDLRKR VLVSPIFVCL VCTKESSSQQ HMAVHCKKHV 60 QAGMAKGTVK HIKYYPDHTT CHFFGINPQP TTPQDSGSAN RVKQVPMPSY KTVLYYAGDA 120 FVSHLASMLP ENPNGVGPII APIGNRSNID LTLRLGSTRG TIADVSIVRL LRARPVE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813180.1	1e-120	uncharacterized protein LOC112890514
TrEMBL	A0A2T7E037	1e-123	A0A2T7E037_9POAL; Uncharacterized protein
STRING	Pavir.Db01013.1.p	1e-106	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12125	2	3

Link Out ? help Back to Top
Phytozome	Pahal.D01904.1