PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01971.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 88aa    MW: 9591.58 Da    PI: 6.7936
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01971.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07449345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WTt   + + +a +++ ++   +W ++a+ +g g+t  ++k  + 
   Pahal.D01971.4  4 SWTTRQNKVFEEALAMYDKDtpdRWQKVAQAVGGGKTVDDVKMQYK 49
                     7***************************************997775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.968156IPR017884SANT domain
SMARTSM007172.9E-5154IPR001005SANT/Myb domain
SuperFamilySSF466892.33E-11357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSSWTTRQN KVFEEALAMY DKDTPDRWQK VAQAVGGGKT VDDVKMQYKE LTKDVKEMDT  60
AGLQNFQYGS SSNTSMGGSS SNGQLRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-154711076RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813660.11e-51protein RADIALIS-like 6 isoform X2
RefseqXP_025813661.19e-52protein RADIALIS-like 4 isoform X3
SwissprotQ1A1735e-19RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2S3HJZ17e-57A0A2S3HJZ1_9POAL; Uncharacterized protein
TrEMBLA0A2T7E0D37e-57A0A2T7E0D3_9POAL; Uncharacterized protein
STRINGPavir.Da01122.1.p9e-50(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-20RAD-like 6