PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02046.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 252aa    MW: 25926.2 Da    PI: 4.618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02046.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.6e-183378352
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ 
  Pahal.D02046.1 33 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALV 78
                    9****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-123178IPR001471AP2/ERF domain
SMARTSM003803.4E-353295IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-213289IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-313290IPR001471AP2/ERF domain
PROSITE profilePS5103223.1823289IPR001471AP2/ERF domain
CDDcd000183.04E-203390No hitNo description
PRINTSPR003671.2E-103344IPR001471AP2/ERF domain
PRINTSPR003671.2E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPDSDVTSSP ASPPGGAVEK RGGKGGGGRR PAYRGVRMRA WGKWVSEIRE PRKKSRIWLG  60
TFPTAEMAAR AHDAAALVVK GPAAVLNFPE IAASLPRPAS AAPRDAAAAR AAAMDVPAAV  120
AGAAAAAVPP AAPQEPPPSP HQQVPDPGQA LVAADPDEEL EEIVELPSID EEALAADDLF  180
WTTASFHVHH DSAAAADPWY EPAAAWMHAA GIAAQVDDMP LVVPGLAADQ LWAPQPDGIV  240
PSGFGALLWN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-192289472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12028RGGKGGGGR
22127GGKGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745751e-101EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813011.11e-128ethylene-responsive transcription factor ERF038-like
TrEMBLA0A2S3HIQ21e-171A0A2S3HIQ2_9POAL; Uncharacterized protein
STRINGPavir.Da00839.1.p4e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-19ERF family protein