PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02101.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 357aa    MW: 40029.2 Da    PI: 7.7822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02101.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-092444526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G C+yG+rC++ H+
  Pahal.D02101.5 24 VCTFYQK-GACSYGSRCRYDHV 44
                    5******.*************7 PP
2zf-CCCH19.41.9e-06139160426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ fa+ G C+yG+ C+ +Hg
  Pahal.D02101.5 139 PICS-FAAAGNCPYGEGCPQMHG 160
                     6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.681118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2771946IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-52143IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-42145IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-72444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-42443IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.343135162IPR000571Zinc finger, CCCH-type
SMARTSM003560.016136161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.35E-11193268No hitNo description
Gene3DG3DSA:3.30.40.102.8E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00117203263No hitNo description
SMARTSM001843.9E-7204261IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.238204262IPR001841Zinc finger, RING-type
PfamPF000973.8E-7204261IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.676291320IPR000571Zinc finger, CCCH-type
SMARTSM003560.011291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MHGACLKGEY CEFSHDWKDQ ANNVCTFYQK GACSYGSRCR YDHVKVSRNP TVLLPSPSSS  60
TARLTSTSLQ LSSSGHPPRT GHPTDSSNQR NQISVDVLAH SASKPAWRND FQHVSEDGID  120
WSSNQTLQNQ TSLKPADLPI CSFAAAGNCP YGEGCPQMHG DLCSTCGKMC LHPYRPDERE  180
EHIKLCEKNH KRLEALKRSQ EIECSVCLDR VLSKPTAAER KFGLLSECDH PFCVACIRNW  240
RSNSPASGMD VNSALRACPI CRKLSYYVIP SVLWYFSKEE KEEIIESYKS KLKSIDCKYF  300
DFGTGSCPFG TSCFYRHAYR DGRLEEVVLR HLDADDGSTV IAKNIRLSDF LSRMHL*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656290.0BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811901.10.0E3 ubiquitin-protein ligase makorin isoform X2
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2S3HJQ50.0A0A2S3HJQ5_9POAL; Uncharacterized protein
STRINGSi006712m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-132C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]