PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02122.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 737aa    MW: 77470.4 Da    PI: 6.0716
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02122.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-31549633186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Pahal.D02122.1 549 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 633
                     8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.317542606IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-4545605IPR009057Homeodomain-like
SMARTSM007170.0065546608IPR001005SANT/Myb domain
PfamPF138377.9E-23548635No hitNo description
CDDcd122039.41E-30548613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMSAPPQQPQ PPQPAAAQEL GGPFRYQPLH HHALPPQHHH  60
HAPHMPPHFA HFGAPPQAPF TQQLLHQAAA AGHHHHLQLF HEQHHHHKPP PPQPQQHQPQ  120
QSAPSRWAPQ HHHQQPHQQH HHPHHLGFDV EAVPESSGAG AGSAASGGAA PPGVPPFLAA  180
AMNFKLAVDA GGGSGATGGT DDALNDGGGG AGSGMMLHVG GGGGGGDDEA APESRLRRWN  240
GDEETSIKEP TWRPLDIDYL HSTSSSKRAP GKEKVATPES PAPTAAAANY FKKGDDNAAA  300
AAAAAAAASA GGSNYKLFSE LEAIYKPGSS GAGGAQTGSG SGLTGDDNAI LEPAMADLPG  360
VAAADAPQLN TSETSAGEDA AAVVQPPQPQ PSADAARRKR KRRRQEQLSA SASFFERLVQ  420
RLMEHQESLH RQFLDAMERR ERERAARDEA WRRQEADKFA REATARAQDR ASAAAREAAI  480
IAYLEKISGE SIALPPPAAA SGDDMSQDAA AGKELVPYDG GGGGGGGVCG DTAPGSGGDV  540
GSLHLSTSRW PKHEVEALIR VRTGLEGRFQ EPGLKGPLWE EVSARMAAAG YGRSAKRCKE  600
KWENINKYFR KAKESGKKRP AHAKTCPYFD ELDRLYSRTG GQSNNGSAGS NSNAGGGDEA  660
KASSELLDAV VRYPDAQGGP PGFMFDREHQ NEAGGREEGA ADEEEDGGIA KGRAADDEDQ  720
DQDDEVESHG GHDDDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396401RRKRKR
2397402RKRKRR
3397403RKRKRRR
4398403KRKRRR
5399403RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0883331e-180BT088333.2 Zea mays full-length cDNA clone ZM_BFc0144A13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819158.10.0trihelix transcription factor GT-2-like
TrEMBLA0A2S3GKE40.0A0A2S3GKE4_9POAL; Uncharacterized protein
STRINGSb04g000520.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.29e-39Trihelix family protein