PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02336.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 393aa MW: 43691.5 Da PI: 9.0266

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02336.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	136	199	1	47
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT E+e+lv+a + ++ W Ia+t++ Rt+kq+k++w+ y Pahal.D02336.1 136 RLDWTIAEEEKLVHAWVYHSNDsvtgnnqtgfsFWGQIAETFNstaepsRCRTAKQLKDHWNVY 199 789********************************************99*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.249	131	200	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.6E-5	132	199	IPR009057	Homeodomain-like
Pfam	PF14303	1.3E-7	244	370	IPR029466	No apical meristem-associated, C-terminal domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MTGWSPDFHT FTDLLQSDRS QVSSQDESSP IHRRSDVNSS SQPRVLFSPA APPAPEAPPP 60 PYHYPYGSYS YPPPPYAPPP GTRSGTEGPY PPPSYAPPPY GPYPPPPHAA PTVPSPVSVE 120 SQNEGAGATK PKRPKRLDWT IAEEEKLVHA WVYHSNDSVT GNNQTGFSFW GQIAETFNST 180 AEPSRCRTAK QLKDHWNVYN CEVTLFNGYY IQEERVRQSG ADDAMVMEGA MARYENDPKV 240 MTAFKRHHWW RAVRHEPKWA AKHGPGSGSD VSSKRTQLGV LGEYSSSGTQ DTEEDNETRP 300 IGRDKAKTAK RKEKAKGKEK GKKSSSSSAV ASKVFAMKNM WGGLVKAKLF KQWNIMKSRS 360 TADMDEAEKR THFKAVKMVE KEFGLDENSE ED*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MTGWSPDFHT FTDLLQSDRS QVSSQDESSP IHRRSDVNSS SQPRVLFSPA APPAPEAPPP  60
PYHYPYGSYS YPPPPYAPPP GTRSGTEGPY PPPSYAPPPY GPYPPPPHAA PTVPSPVSVE  120
SQNEGAGATK PKRPKRLDWT IAEEEKLVHA WVYHSNDSVT GNNQTGFSFW GQIAETFNST  180
AEPSRCRTAK QLKDHWNVYN CEVTLFNGYY IQEERVRQSG ADDAMVMEGA MARYENDPKV  240
MTAFKRHHWW RAVRHEPKWA AKHGPGSGSD VSSKRTQLGV LGEYSSSGTQ DTEEDNETRP  300
IGRDKAKTAK RKEKAKGKEK GKKSSSSSAV ASKVFAMKNM WGGLVKAKLF KQWNIMKSRS  360
TADMDEAEKR THFKAVKMVE KEFGLDENSE ED*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644673.1	1e-133	uncharacterized protein LOC103626074
TrEMBL	A0A2S3IRC9	0.0	A0A2S3IRC9_9POAL; Uncharacterized protein
STRING	GRMZM2G088005_P01	1e-132	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3263	3	37

Link Out ? help Back to Top
Phytozome	Pahal.D02336.1