PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02342.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 368aa    MW: 37807.5 Da    PI: 7.0851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02342.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.7e-27155215259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D + WrKYGqKe+++s++prsYYrCt++   gC++k++v+rs++dp++ ++tY geH+++
  Pahal.D02342.1 155 EDDHVWRKYGQKEIQNSPYPRSYYRCTHSsgqGCNAKRQVQRSETDPSMYVVTYYGEHTCR 215
                     89**************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.442149217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-28149217IPR003657WRKY domain
SuperFamilySSF1182904.05E-26152217IPR003657WRKY domain
SMARTSM007749.8E-37154216IPR003657WRKY domain
PfamPF031067.5E-26155215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGVNYKKQSH NSRAPQVCYS RRSVRTSVCI GSSLAESDMS TTLPAERAAA AVNDLVEARD  60
GAATLRTFLL QLDDQRAPWA QRVVDGVLSR LSSAMSALDV GGAAAEGGQS PVAGSGSGGA  120
SRPQQSASSS GNTKKRSFSG RSQRPSDKKI TATLEDDHVW RKYGQKEIQN SPYPRSYYRC  180
THSSGQGCNA KRQVQRSETD PSMYVVTYYG EHTCRDPSTI PLVVHAAGAA PDRASNLISF  240
GHSGANDNAA ASAGAGASSS QYLAIGGRTT ADQLSTSWCT SDDMFSSSAG SFMQVEELIS  300
AVVGSAGVTS TATAGSSALD RGGLGGMVGG AGGTASFSPS PNALADFVVG SLGSIGGNDD  360
DLFSMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-24150215469OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796867.10.0WRKY transcription factor 55-like
TrEMBLA0A2S3IQX00.0A0A2S3IQX0_9POAL; Uncharacterized protein
STRINGPavir.J05812.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-25WRKY DNA-binding protein 70