PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02420.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 189aa MW: 20106.5 Da PI: 10.3615

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02420.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.6	3.2e-14	118	159	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r +r++kNRe+A rsR+RK+a+++ Le k+ +Le+eN +L+ Pahal.D02420.1 118 RRKKRMIKNRESAARSRARKQAYTKDLEIKISQLEEENLRLR 159 799***********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-7	114	182	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	116	159	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.7E-14	118	159	No hit	No description
SuperFamily	SSF57959	1.06E-10	118	160	No hit	No description
CDD	cd14707	9.29E-20	118	159	No hit	No description
Pfam	PF00170	7.1E-12	118	159	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	121	136	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSSHGSGGGG GAVSRQGSVC SLTFGDADAQ LHGVNLDDLL RAGRKTVDEL YQPGPAPQLG 60 HHHHPAVGRP VPWPLGVGAG PVLDALYYDG HEGGGAAAAA GGKRAGPERG VAERSNERRK 120 KRMIKNRESA ARSRARKQAY TKDLEIKISQ LEEENLRLRG HKAPEPVAQY VPPQEVKSQL 180 RRTNSANF*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361423	6e-34	AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797011.1	1e-106	ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2T8I527	1e-105	A0A2T8I527_9POAL; Uncharacterized protein
STRING	Pavir.Ib01001.1.p	4e-83	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-26	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Pahal.D02420.1