PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02524.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 349aa    MW: 36961.3 Da    PI: 7.1416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02524.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20170220256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+ge
  Pahal.D02524.1 170 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRGE 220
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.58E-31169227No hitNo description
Gene3DG3DSA:3.30.730.107.0E-32170228IPR001471AP2/ERF domain
SMARTSM003808.5E-37170233IPR001471AP2/ERF domain
PROSITE profilePS5103223.182170227IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-22170227IPR016177DNA-binding domain
PfamPF008471.7E-13171220IPR001471AP2/ERF domain
PRINTSPR003672.3E-10171182IPR001471AP2/ERF domain
PRINTSPR003672.3E-10193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFSY PYPSALPQDS  60
YYYYPAAAAS YTALPPPPPA PTATSFSQLP PLPPSSSSYA TPAAPYLTST VDVAAGLALN  120
HLGPAQIQQI QAQFMLRQQQ QRCLAASLLG PRAQPMKQAG AAAPLSAAKL YRGVRQRHWG  180
KWVAEIRLPR NRTRLWLGTF DSAEDAALAY DKAAFRLRGE AARLNFPSLR RAGAHLAGPL  240
DASVDAKLTA ICQGLAAAPA SKATASTTAA PDSPKASTST TTTEGDESVH SAGSPPSLPA  300
FPQQHQQQAT PLPEMASLDF TEAPWDESAA LHLNKYPSWE IDWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-20169227160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-20166227163ATERF1
3gcc_A6e-20166227163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812857.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A2S3HK660.0A0A2S3HK66_9POAL; Uncharacterized protein
STRINGPavir.Da01302.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-44related to AP2 4