PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02548.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 63aa MW: 7267.65 Da PI: 9.6829

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02548.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.7	1.9e-11	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl h+kSHLQkYRl Pahal.D02548.1 1 MRTMGVKGLTLFHLKSHLQKYRL 23 689*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-10	1	24	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MRTMGVKGLT LFHLKSHLQK YRLGRQSGKE MTEQSKDGKL RCIDDTLNWY ALLIPCCMLF 60 VY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039053	3e-36	BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds.
GenBank	EU967839	3e-36	EU967839.1 Zea mays clone 306497 myb family transcription factor-related protein mRNA, complete cds.
GenBank	JX469981	3e-36	JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583325.1	7e-19	protein PHR1-LIKE 2-like isoform X2
Refseq	XP_025821023.1	7e-19	protein PHR1-LIKE 2-like
Swissprot	Q94A57	4e-16	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2I0WUB8	2e-17	A0A2I0WUB8_9ASPA; Myb family transcription factor APL
TrEMBL	A0A2T7D6B3	2e-17	A0A2T7D6B3_9POAL; Uncharacterized protein
TrEMBL	A0A2T8IGC6	2e-17	A0A2T8IGC6_9POAL; Uncharacterized protein
TrEMBL	A0A3L6PSS7	2e-17	A0A3L6PSS7_PANMI; Myb family transcription factor APL-like
TrEMBL	A0A426YUN4	1e-17	A0A426YUN4_ENSVE; Uncharacterized protein
STRING	Pavir.J35437.1.p	4e-34	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	2e-18	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.D02548.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]