PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02555.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 467aa    MW: 49641.7 Da    PI: 6.9459
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02555.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.1e-094034411854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  Pahal.D02555.1 403 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 441
                     57766689*****************************88 PP
2BELL28.83e-10269338172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++++qk k+ L +ll+ +d+r +q+v+++q  +s +  ++g g+  + + +A +a+S  +r L+ +i++ i
  Pahal.D02555.1 269 EEHAHQKVKNDLQKLLQLLDQRCNQCVDEIQSAASKYGGMVGGGA--LLAPFAHRAVSATHRRLRARITGEI 338
                     57899999**********************************999..99*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0035201336IPR006563POX domain
PfamPF075262.9E-17211335IPR006563POX domain
PROSITE profilePS5007111.953382445IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-26384457IPR009057Homeodomain-like
CDDcd000865.69E-12385446No hitNo description
SuperFamilySSF466894.23E-16385454IPR009057Homeodomain-like
SMARTSM003891.6E-7385449IPR001356Homeobox domain
PfamPF059206.0E-16402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTGNASYQQL GLGVDAMMSG CFVSGGAGSV VGADTQVFHD GSFGFGEPAD VAASFLMDGG  60
SMLAGQLQLI RAAATQSVSP EEMRGVAYGG YGPSPSDVTV AHAPKVAKLA EETEGSWIHE  120
PYYGPTWFSG DGFRDPFAAA ASELSLRLRP ESLPAGGVNV SLPDQSSEVS CSGLTHASSS  180
AAGSVFQTPC GGGDMARPGP LHFSHVLPRW SGYAHVTQQT LDEFVVCLLQ DVAGFPGSAG  240
GGGETSCPLP ISSSSKTTSS NASAFLGSEE HAHQKVKNDL QKLLQLLDQR CNQCVDEIQS  300
AASKYGGMVG GGALLAPFAH RAVSATHRRL RARITGEIAA ASRRREPPPP PSSLTLADRE  360
RSWESAFIQK HWALRQLRRG DQQSWRPQRG LPEKSVAVLK AWMFENFLRP YPKDNEKEML  420
AARSGLSRSQ VSNWFINARV RLWKPMIEEM YEDLKKASGG GEGVAA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813413.10.0homeobox protein ATH1-like
TrEMBLA0A2S3HIJ80.0A0A2S3HIJ8_9POAL; Uncharacterized protein
STRINGPavir.Db01271.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-47homeobox gene 1