PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02718.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 455aa    MW: 49448.3 Da    PI: 7.5771
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02718.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP733.3e-2390155171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     rk+ksL+ll+++f++l+ +++ +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w g
  Pahal.D02718.1  90 RKQKSLGLLCSNFVALYDQENVETIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 155
                     79*****************999************...**..****************************87 PP
2E2F_TDP77.41.4e-24233313171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                     rkeksL+lltq+f+kl+ + e ++++l+e+a+ L+ e     ++++k+RR+YDi+N+L++lnliek     ++k+++rw g
  Pahal.D02718.1 233 RKEKSLGLLTQNFVKLFLTMEVETISLDEAARLLLGEghaesNMRTKVRRLYDIANILSSLNLIEKtqqadTRKPAFRWLG 313
                     79******************************************************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-2686156IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.62E-1789154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.0E-2990155IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-2191155IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-23230314IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.4E-32233313IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.1E-20234313IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.39E-12235313IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDSASATAAA AAGPSSSSEA AAAGPSSSAA PAAAARSSSG AEPPAAAAQP QPVAPQVQFL  60
QATVLGGGGG AGSGGGSGVA RACRHHAYSR KQKSLGLLCS NFVALYDQEN VETIGLDDAA  120
KRLGVERRRI YDIVNVLESV GILVRRAKNR YTWLGFGGVP AALKELKERA LREMSGSLVL  180
PPMEESSTAN LSDDEDDEKL EDADEDDEKL SQSVDNTSDK PDAPGCRLRS DHRKEKSLGL  240
LTQNFVKLFL TMEVETISLD EAARLLLGEG HAESNMRTKV RRLYDIANIL SSLNLIEKTQ  300
QADTRKPAFR WLGQAKRKQE NTKVALPPAR PNKRAFGTDL TNFDNKRGRL DSTTENKAKL  360
MQGAGNIVKT FERQLGQGNR SDFVYGPFHP AVVKKQESDD HTVRQKERKT IQDWENLAVS  420
FCPQYQNQAL NDLFGHYVEA WKSWYLDLTR ETSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-38893053228Transcription factor E2F8
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280270.0KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812181.10.0E2F transcription factor-like E2FE
TrEMBLA0A2S3HKK40.0A0A2S3HKK4_9POAL; Uncharacterized protein
STRINGSi006412m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-104DP-E2F-like 1