PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02830.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 232aa    MW: 23587.1 Da    PI: 4.5043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162472355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ykGVr ++ +g+Wv+e+r p   g+++r++lg++ tae Aa+a++aa ++l+g
  Pahal.D02830.1 24 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 72
                    9****998.*******9998...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-262382IPR001471AP2/ERF domain
SMARTSM003808.3E-282388IPR001471AP2/ERF domain
PROSITE profilePS5103220.6662382IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-162383IPR016177DNA-binding domain
PfamPF008474.0E-102472IPR001471AP2/ERF domain
CDDcd000181.05E-132482No hitNo description
PRINTSPR003672.9E-82435IPR001471AP2/ERF domain
PRINTSPR003672.9E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVKAAAASND TASAAAKHGA KRTYKGVRMR SWGSWVSEVR APGQKTRIWL GSHSTAEAAA  60
RAYDAALLCL KGSAAAADLN FPLRLPFDLP PAAMSPKAIQ RVAAAAAAAA GGAGFAACAA  120
DNADSACSGT TAATPAWSSG SPSDDASAVS SPESTLSSES ELPAHHYGDA DADYYSSLAD  180
IDAFFQSPKC MEYAMMDPCS AFFAPAPAAA DDACWEEEGD IALWSFSALG C*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046873e-76AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149623e-76AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-76CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810729.11e-162ethylene-responsive transcription factor ERF014-like
RefseqXP_025810730.11e-162ethylene-responsive transcription factor ERF014-like
RefseqXP_025810731.11e-162ethylene-responsive transcription factor ERF014-like
TrEMBLA0A2S3HKS71e-161A0A2S3HKS7_9POAL; Uncharacterized protein
TrEMBLA0A2T7E1G31e-161A0A2T7E1G3_9POAL; Uncharacterized protein
STRINGSi007977m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.14e-23ERF family protein