PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00006.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 423aa    MW: 45565.7 Da    PI: 7.271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00006.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.41.4e-19111383127
             NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknratksgyWkatgkd 89 
                     +Gfr +Pt  e  ++yL + ++g +l+++    i+++d+y +eP +L ++++   ++ + +fF++ + +++    +  r++ra+ +g W+++g +
  Pahal.E00006.1  11 RGFRLNPTPLEAATYYLPQLLAGAPLHEAIrPfIHHADVYACEPGELARQFRPlpRTGHRFFFTHCKLQQPhkagKAGRATRAAGAGSWHSQGVT 105
                     7************************66544235**************86544433455889999888777733334559999999********96 PP

             NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       v ++k+ +vg  + L +     + g  tdW+m+ey+
  Pahal.E00006.1 106 DVV-DRKKVKVGEMRKLRYK----KGGAYTDWLMDEYS 138
                     655.559999*********8....456789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-228159IPR003441NAC domain
PROSITE profilePS5100523.0359159IPR003441NAC domain
PfamPF023652.6E-1011138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASLGPEIFF RGFRLNPTPL EAATYYLPQL LAGAPLHEAI RPFIHHADVY ACEPGELARQ  60
FRPLPRTGHR FFFTHCKLQQ PHKAGKAGRA TRAAGAGSWH SQGVTDVVDR KKVKVGEMRK  120
LRYKKGGAYT DWLMDEYSCC LQDAVVGDRQ YVFCNIYVSP RAAPGSAARQ ESAAFFATPA  180
PAPAPVVIAQ APPPKRPAPQ VAEPPCPKRT LGAVVAPAPP VVQPAASCTA YFAPPRPCVP  240
NGSVAPSSTS TPSVIRSSPA SAQPPARAPT RLAAPPSRTP AHGPPQPVAQ PKQQMPPPIP  300
PVVRACHMPV QAPAQHCRPQ PSAQTKKKTR DPFEAAEPRE RDEAEEERVA AFDLPSEESP  360
AALQDDDFDE DDLAKAMEEA MKTADAEEEA AGNSTMTDDE MEQHIFSLLG DDTVIVPKEE  420
KK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-171atherin-like
TrEMBLA0A2S3H5K70.0A0A2S3H5K7_9POAL; Uncharacterized protein
STRINGPavir.Ha01903.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-08NAC domain containing protein 57