PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00161.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 217aa    MW: 23978.8 Da    PI: 7.4115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00161.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.1e-17261537128
             NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk..atgkdkevlskkgel 99 
                     F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   +++ +fF+ r +   + + ++ ++ +g W   +t   ++v++ +  +
  Pahal.E00161.1  26 FEPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCAAAPWELLARYGL-RDQGHFFAARGRGRGRPSVRRAVAGAGAWMhsSTRAGRSVTDLGVVV 119
                     9***********************999**************855544.56789*****9987765544448889***844567789999988999 PP

             NAM 100 vglkktLvfy......kgrapkgektdWvmheyrl 128
                      + +  + fy         + + ++t Wvm+ey++
  Pahal.E00161.1 120 RWSRVKFCFYaggpagA-GQGQQRSTGWVMEEYEI 153
                     999*******6665422.3334469********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.29620180IPR003441NAC domain
SuperFamilySSF1019418.24E-2825180IPR003441NAC domain
PfamPF023651.2E-1126153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDEEPNLSA EEDGADHLAA GDLGGFEPTE DELVLHFLRP QLRGFPPRVA GAVLEADPCA  60
AAPWELLARY GLRDQGHFFA ARGRGRGRPS VRRAVAGAGA WMHSSTRAGR SVTDLGVVVR  120
WSRVKFCFYA GGPAGAGQGQ QRSTGWVMEE YEITDPRCYR RCDEEGEEDD YWVLCRVRKS  180
KRPAAASPPA RQRWRRLDEL EPDSGAKAKI SRPLRT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816116.11e-155NAC domain-containing protein 18-like
TrEMBLA0A2S3HN471e-154A0A2S3HN47_9POAL; Uncharacterized protein
STRINGPavir.Ea04027.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528