PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00328.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 210aa    MW: 22548.2 Da    PI: 6.4165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00328.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.9e-094392156
             AP2  1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    + y+GVr +   g   Wv+e         ++r++lg+  t+e+Aa+a++ a+ +l+g+
  Pahal.E00328.1 43 PVYRGVRDRAGPGGtrWVCE---A-----QARIWLGTDPTPEMAARAHDVAAIALRGA 92
                    5799**7333333367**99...5.....7*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-54391IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1044102IPR016177DNA-binding domain
PROSITE profilePS5103217.02944100IPR001471AP2/ERF domain
SMARTSM003804.7E-1444106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1644102IPR001471AP2/ERF domain
CDDcd000185.99E-1745102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDAKGDSSSA ASSSSPPTSQ GRRLPQHQLP PKRRAGRKKT RHPVYRGVRD RAGPGGTRWV  60
CEAQARIWLG TDPTPEMAAR AHDVAAIALR GASTADLNFP DSVHTLPRAR TAVPEDIRCA  120
AAQAAELHRP SSGSSSGHQQ HIIATAAEPC TPSWAFLDED AIFDMPGLMD DMARGMLLTP  180
PAMGRGIDWD AVDDEHTHVD GTLWMDMED*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276713e-76KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819286.11e-132LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI43e-66DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z53e-66DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A2S3HMS61e-149A0A2S3HMS6_9POAL; Uncharacterized protein
STRINGSi002846m3e-78(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.18e-35C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]