PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00368.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 195aa    MW: 21490.3 Da    PI: 10.0315
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00368.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-203266135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Pahal.E00368.1 32 CADCHTTKTPLWRGGPEGPKSLCNACGIRYRKRRR 66
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-132665No hitNo description
Gene3DG3DSA:3.30.50.105.5E-162667IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.2172662IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-192692IPR000679Zinc finger, GATA-type
CDDcd002028.53E-153167No hitNo description
PfamPF003204.4E-183266IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGMGMEMETD PNTSSPSADD ATATASGETK ACADCHTTKT PLWRGGPEGP KSLCNACGIR  60
YRKRRRQALG LDAAADTQQD QQQPKRKAAD PPEDHQQHKA ADPQEDQQQP KKKAAAASSS  120
TTTTITTKKE KEREKDKDKK RKDRQVTVEL RVVGFGKEVM LKQRRQMRRK KCMSEEERAA  180
VLLMALSSGV IYAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16165RKRRR
2132141REKDKDKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9674443e-42EU967444.1 Zea mays clone 303140 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818098.11e-141GATA transcription factor 15-like
TrEMBLA0A2S3HMN71e-139A0A2S3HMN7_9POAL; Uncharacterized protein
STRINGGRMZM2G138967_P014e-74(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-18GATA transcription factor 16