PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00446.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 539aa    MW: 57618.3 Da    PI: 6.3944
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00446.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.18e-1041645371374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel....ykalppsetseknsseelaalklfsevsPil 91 
                     lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +      + a+   ++ + +   +  al l +e++P+l
  Pahal.E00446.1 164 LVQLLVACAEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPAlgpaSMAFCIPPSCTGRDGARGEALALAYELCPYL 258
                     689**************************************************9865544111122333333333346777788899******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                     +f+h++aN  Ilea+ege+ vH++D++++     G QW  Ll+ La+R++ +p ++ iTgvg+      ++++++g+ L+ +Ae lg+ +ef++ 
  Pahal.E00446.1 259 RFAHFVANASILEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARAGAKPkRVCITGVGA----PVDTMRAVGRELEAYAEGLGMYLEFRA- 348
                     *************************98762222567*************66665*********....99*************************. PP

            GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                     v ++le+l++++L +  +Ea+a+n++l+lh +++es    +   +vL+++++lsPk +v+veq+a hn++ Fl rf+eal+yy+a+fd+l+a lp
  Pahal.E00446.1 349 VDRSLESLHIDDLGIGADEAVAINSILELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEALHYYAAVFDALDAALP 440
                     799******************************88877777...8************************************************** PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                     r +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF+++p++    + a+  l++ + + gy+v ee+g+lvlgWk++p++++
  Pahal.E00446.1 441 RYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSMPIRMA--ARAREWLEENAgGGGYTVAEEKGCLVLGWKGKPVIAA 533
                     *****************************************************765..567888888887999********************** PP

            GRAS 371 SaWr 374
                     S+W+
  Pahal.E00446.1 534 SCWK 537
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.716138518IPR005202Transcription factor GRAS
PfamPF035142.7E-101164537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MGMSEQPCRS TPSSFTTSYG SSQQIHHLPQ HDAVLCTERG LGFPYYYGTD QQDAAFDGDE  60
VELGFRASKV TKVDYYSSPY QPSWPLARAD VAAVAAESSR VRKQRFRDVL ESCKQKVEAM  120
EAMESPVAFQ EGEDGGVAGD GGGAAGGGGG GSGGGGGGAD GMRLVQLLVA CAEAVACRDR  180
AQAAALLREL QVGAPVHGTA FQRVASCFVQ GLADRLALAH PPALGPASMA FCIPPSCTGR  240
DGARGEALAL AYELCPYLRF AHFVANASIL EAFEGESNVH VVDLGMTLGL DRGHQWRGLL  300
DGLAARAGAK PKRVCITGVG APVDTMRAVG RELEAYAEGL GMYLEFRAVD RSLESLHIDD  360
LGIGADEAVA INSILELHCV VKESRGALNS VLQTIRKLSP KAFVLVEQDA GHNGPFFLGR  420
FMEALHYYAA VFDALDAALP RYDARRARVE QFHFGAEIRN VVGCEGAARV ERHERADQWR  480
RRMSRAGFQS MPIRMAARAR EWLEENAGGG GYTVAEEKGC LVLGWKGKPV IAASCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5417153626378Protein SCARECROW
5b3h_A3e-5417153625377Protein SCARECROW
5b3h_D3e-5417153625377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814052.10.0DELLA protein RGL1-like
TrEMBLA0A2S3HNZ90.0A0A2S3HNZ9_9POAL; Uncharacterized protein
STRINGSi000959m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-63GRAS family protein