PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00452.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 576aa    MW: 64419.3 Da    PI: 5.053
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00452.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.3e-26195248155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Pahal.E00452.1 195 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 248
                     68*******************.9*******************************8 PP
2Response_reg80.17.4e-27151231109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++ al++l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + + ++ G
  Pahal.E00452.1  15 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLASVALQILRERRnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQHG 107
                     89*********************.***************888888**********************6654.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  Pahal.E00452.1 108 ACDYLLKPVRMKELRN 123
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.4E-1642561IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.7E-4312149No hitNo description
SuperFamilySSF521729.68E-3512135IPR011006CheY-like superfamily
SMARTSM004482.2E-3113125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.38114129IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-2415124IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.71E-2816128No hitNo description
SuperFamilySSF466893.23E-18192252IPR009057Homeodomain-like
PROSITE profilePS512949.161192251IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-28194253IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-23195248IPR006447Myb domain, plants
PfamPF002499.0E-8197247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MALADATAFP YGLRVLVVDD DPTWLKILEK MLRKCSYEVT TCGLASVALQ ILRERRNKFD  60
IVISDVNMPD MDGFKLLEHI GLEMDLPVIM MSIDGETSRV MKGVQHGACD YLLKPVRMKE  120
LRNIWQHVYR KKMHEVKEIE GNDFCDDLQI FRNGCEGLEE RGLFMRADSD TMRKRKDVDK  180
DNTDQDSSDG ATVKKARVVW SVDLHQKFVN AVNQIGFDKV GPKKILDLMN VPGLTRENVA  240
SHLQKYRLYL SRLQKQNEER IMGAARQDFS HKGPSDNLNL RNSFQEQPGN GANGFQHSSQ  300
KIQAQSNMLD PHLEDTKIVV PLKVPDKNRT PVSDVIDPQN VTSASPLGGV LSFERMPLNQ  360
DRKPSETMIL ECQSWSGSVP PKQFMQYPKH NHERCDLLGD YSCLPKPDLE HPITPGHLYA  420
PPPLVSMSCS MEGDVRDFSD VKPDLLGCMK SLSPALTCTV DSVSAQLSDS VVTSTNIDQK  480
FSSVEGLSSG KDCHFDQARN QAPLLTSEEA STICGTDLAC LPDDLSGYQL GLNGIDLFQC  540
NDAMMLHGLQ NNWYDDPELS SEIMEFPLLD GCLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17194253463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9747740.0EU974774.1 Zea mays clone 457889 two-component response regulator ARR11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817738.10.0two-component response regulator ORR26
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2S3HNX40.0A0A2S3HNX4_9POAL; Two-component response regulator
TrEMBLA0A2T7DCX70.0A0A2T7DCX7_9POAL; Two-component response regulator
STRINGPavir.Ea03527.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-113response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]