PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00456.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 653aa    MW: 72064.9 Da    PI: 5.3488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00456.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.62.2e-1384171197
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+    +++++ + +p +fa+++ ++   +   + led  g +W+v+l  + ++g + ++ GWk+Fv ++ +  g+f+vF+ + rs f  +v
  Pahal.E00456.1  84 FFKVM--MGYFSEH-MDVPPPFARTIlDLA--G-SNIYLEDAFGLRWRVRL--CLRDGVMSFGHGWKNFVLDHAVSCGEFLVFRQIARSVF--TV 168
                     77888..6667777.99*********6333..3.37***************..88888899***********************9888888..77 PP

                     EEE CS
              B3  95 kvf 97 
                     ++f
  Pahal.E00456.1 169 QMF 171
                     766 PP
2B331.62.9e-105836472995
                     -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     kk++ k ++l+d+  r W v +  + +++   + +GW + +++n+L+egD++ F+l g+se ++ v+
  Pahal.E00456.1 583 KKQGRKVVILKDPCMRLWPVLY--QCTPRFSGFITGWVDICRENNLQEGDTCEFELGGNSELSFQVR 647
                     455667899*************..55665555667*********************99888866665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.47881174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-1981174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2181174IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-1782171No hitNo description
PfamPF023621.2E-1084171IPR003340B3 DNA binding domain
SMARTSM010198.1E-1384174IPR003340B3 DNA binding domain
PROSITE profilePS5086310.264555650IPR003340B3 DNA binding domain
SMARTSM010190.0013558650IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14569650IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-12569647No hitNo description
PfamPF023621.9E-8583647IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-12583648IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MVELIGGALK KEPEETVVEI DSKGEEAEKV VKKRRRRKKA CDPHQNRACV DCKKRCARIH  60
GRAASSCPSP SSSKARPIPA VPSFFKVMMG YFSEHMDVPP PFARTILDLA GSNIYLEDAF  120
GLRWRVRLCL RDGVMSFGHG WKNFVLDHAV SCGEFLVFRQ IARSVFTVQM FAPSAVERLF  180
LCEANKRQSR KRKPRQKTSC PSSQTVKISR NCKKKQRTGH HNDQMPDHVC FDDSDVPKSA  240
SELKYSETSG GVPEVGVAEP QEDSEAPTGH DCKAQVVLDG EAEIADDCRV FEEKESECNA  300
RIIQHLVSDA TEIEHGDGLN LPTNTDAIGP LALMDLNEVN IDDIFLSADI YEFETDMCNP  360
EAFSVDLNKE GPITTAKNSG FSCLEDTQQN HFSSIGDDQR FVMPETQSCT ENKQMTDALV  420
TGTGYACVAV HDIDISTLPA NEPSSFAKEN SSPPADPEVH SSECVLSGCN KDNDLLSCKD  480
SQAEHKEVKH DKQQDGQGNE QDSTGQNTAE VISSSTKLHE HPHVCQNLHQ TENNSDGIRS  540
GTSESGGVLA LAASSSKFCI AVPAPDQTWL ELPTRLPVIP RTKKQGRKVV ILKDPCMRLW  600
PVLYQCTPRF SGFITGWVDI CRENNLQEGD TCEFELGGNS ELSFQVRVPN LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138KKRRRRKK
23237KRRRRK
33238KRRRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815832.10.0B3 domain-containing protein Os01g0905400-like
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A2S3HNX60.0A0A2S3HNX6_9POAL; Uncharacterized protein
STRINGPavir.Ea03523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]