PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00552.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 329aa    MW: 36053.9 Da    PI: 9.166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00552.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.51.9e-121943327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C+++++tGtCk+G++CkF+H++
  Pahal.E00552.2 19 QPECQYYLKTGTCKFGPTCKFHHPR 43
                    799********************96 PP
2zf-CCCH322e-106589327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C ++++tG+Cky ++CkF+H++
  Pahal.E00552.2 65 EKECAYYLKTGQCKYANTCKFHHPE 89
                    679********************96 PP
3zf-CCCH39.87.7e-13216241227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+G+ CkF+H++
  Pahal.E00552.2 216 DQPECQYYMKTGDCKFGAVCKFHHPR 241
                     689*********************96 PP
4zf-CCCH437.2e-14261287127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++elC+f++r+G+Ck+G++CkF H++
  Pahal.E00552.2 261 PGEELCKFYSRYGICKFGANCKFDHPM 287
                     689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.6941644IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-61643IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-101943IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-62045IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-52244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-66289IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-46289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.616290IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-76589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-46888IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5214241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023214242IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9216241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5217241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4220240IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591260288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6261287IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-11262287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5264285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEAIASARMK GEYPERVGQP ECQYYLKTGT CKFGPTCKFH HPREKAGIAG RVQLNTLGYP  60
LRPNEKECAY YLKTGQCKYA NTCKFHHPEL FNVVPSSRGS PIYPSVHSSA STGPQSYTGT  120
MASWAFPRAS FIPSPRWQNP SNYAPMIVPQ GLVQVPSWNS YPGQLQSPGS QQTYGTSQQG  180
EASAGNQGML SPYRSSSFPV PQYALQRENV FPERPDQPEC QYYMKTGDCK FGAVCKFHHP  240
RVRSLPPPDC VLSPMGLPIR PGEELCKFYS RYGICKFGAN CKFDHPMATP MGVYAYGFSA  300
SASPASASTN VPMARRLLGS PSGSGYTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369070.0BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817371.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2T7DCH60.0A0A2T7DCH6_9POAL; Uncharacterized protein
STRINGPavir.J05626.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-116zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]