PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00609.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 386aa    MW: 40365 Da    PI: 9.2305
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00609.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.33.8e-4292168278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C vegC+adls+ ++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+
  Pahal.E00609.1  92 CSVEGCAADLSKGRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSRFHSLGEFDDTKRSCRKRLDGHNRRRRKPQP 168
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-3484153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.89889166IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-3990171IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3192165IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDWDAKMLPA WDLGTVVGPS SGVGVVAAAG ASGGGALDLK LGGPTSWRAV ATAPAAVPLP  60
SPPAPPRPSS SSSSAPAKRP RAGQAQQAVP ACSVEGCAAD LSKGRDYHRR HKVCEAHSKT  120
PVVTVAGQQQ RFCQQCSRFH SLGEFDDTKR SCRKRLDGHN RRRRKPQPDP LNPGGLFANH  180
HGVARFASYP QLFASSMADP KWPVVKTEAD IFQDHYYPAA HLNGAGSLFH GKDRKHFPFL  240
TNHHHGGDAA GAFASQPFTI TAASSESSSK QSNGNCALSL LSDNPTRAQT TTMIPTAQPL  300
GAALQYGGAA RLPDGGDVSL TGMSYARLGD SKQASILTTS TSHTAVASPG PGTQLQYHDY  360
YHVSGGDQGN CPDGAAIQAI PFSSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29921651184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148165KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814120.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-120SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A2S3HNJ00.0A0A2S3HNJ0_9POAL; Uncharacterized protein
STRINGPavir.J02262.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-32SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]