PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00617.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 832aa    MW: 93007.5 Da    PI: 8.0861
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00617.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.61.1e-53161285117
            CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                     k+rwlk++e+++iL n++ + ++++++++p+sgs++L+nr+++ryfr+DGy+w+kkk+gktv+E+he+LKv++v++l+cyYa++++nptfqrr+y
  Pahal.E00617.2  16 KTRWLKPQEVLQILRNHDLFMVSHKPPQKPPSGSWFLFNRRVLRYFRNDGYEWQKKKNGKTVNEAHERLKVDNVDALNCYYARGDKNPTFQRRIY 110
                     89********************************************************************************************* PP

            CG-1 100 wlLeeelekivlvhylev 117
                     w+L+ ++e+ivlvhy++v
  Pahal.E00617.2 111 WMLDPAYEHIVLVHYRDV 128
                     ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.5838134IPR005559CG-1 DNA-binding domain
SMARTSM010769.0E-6611129IPR005559CG-1 DNA-binding domain
PfamPF038594.7E-4916128IPR005559CG-1 DNA-binding domain
CDDcd002049.49E-9458540No hitNo description
SuperFamilySSF484032.33E-13479582IPR020683Ankyrin repeat-containing domain
PfamPF136377.0E-10492544No hitNo description
Gene3DG3DSA:1.25.40.207.1E-14495587IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.194495555IPR020683Ankyrin repeat-containing domain
SMARTSM002483.3E-4523552IPR002110Ankyrin repeat
PROSITE profilePS5008810.927523555IPR002110Ankyrin repeat
SuperFamilySSF525405.58E-8647737IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0066686708IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.309687716IPR000048IQ motif, EF-hand binding site
PfamPF006120.014688707IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0017709731IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578710738IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019711731IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MQQQGLDVHK LQQVVKTRWL KPQEVLQILR NHDLFMVSHK PPQKPPSGSW FLFNRRVLRY  60
FRNDGYEWQK KKNGKTVNEA HERLKVDNVD ALNCYYARGD KNPTFQRRIY WMLDPAYEHI  120
VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHSSPG WTSEFVLPCP NSSSPGSAEE  180
VSSRTVTINN ETNRSGSDWI QHKAALRKLE MQLSLEDKED SNVLAEEVPT NIEHVIVPGI  240
QTGEPGSSAN FEDIFNVLDF SRDHTKENGT DPCPSAIDVL KNSDTWLEED QLEAILHPAS  300
MAPTENLWFN IHEVSPESAF SSEITKVPVE IIQQGAIRCH TPCLNAGKVS MCLIDGNGKP  360
CSEAREFEFH EKPTKSMVDG NEKPCNEAQD IKVHKTPTKS NDELLLLLNY VQILFGHGCD  420
VFSKFSPQLP NPGCGFLVNQ MDIMRKTYEQ LDPEKTVYSV MEVLLNDKFK QWLLSKCEQN  480
SDGNHLLPKQ YHGVIHTIAA LGYDLALKPL LSSGVPINYR DGNGWTALHW AARFGREDMV  540
VALLTAGAAA GALSHPTSED PAAKTPASIA LAFGFKGLSA FLSEEQLTTH LDSIESKENG  600
KCEGNASGGG IRSAVDRISD KSTHVHGGTD DQLALKDSLG AVRNAVQAAA RIQAAFRVFS  660
FKKKKETALQ NSCLSVHETV AVSHGMLERA ALSIQKNFRC WKKRKEFLKL RKNVIKIQAR  720
VRAHQERKKY KELIRSVGVL EKVMLRWYRK GVGLRGFNSG AMPVDEEVEE DVAKVFRKLR  780
VETAIDEAVS RVSCIIGSPK AMQQYRRMLQ RYQQAKVNIP KDASEVPTSK G*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816192.10.0calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A2S3HNJ20.0A0A2S3HNJ2_9POAL; Uncharacterized protein
STRINGPavir.J03014.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.17e-84Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains