PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00617.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 856aa    MW: 95552.6 Da    PI: 7.9567
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00617.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.61.2e-53161285117
            CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                     k+rwlk++e+++iL n++ + ++++++++p+sgs++L+nr+++ryfr+DGy+w+kkk+gktv+E+he+LKv++v++l+cyYa++++nptfqrr+y
  Pahal.E00617.3  16 KTRWLKPQEVLQILRNHDLFMVSHKPPQKPPSGSWFLFNRRVLRYFRNDGYEWQKKKNGKTVNEAHERLKVDNVDALNCYYARGDKNPTFQRRIY 110
                     89********************************************************************************************* PP

            CG-1 100 wlLeeelekivlvhylev 117
                     w+L+ ++e+ivlvhy++v
  Pahal.E00617.3 111 WMLDPAYEHIVLVHYRDV 128
                     ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.5838134IPR005559CG-1 DNA-binding domain
SMARTSM010769.0E-6611129IPR005559CG-1 DNA-binding domain
PfamPF038594.9E-4916128IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.82E-11310393IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.104.8E-6310395IPR013783Immunoglobulin-like fold
CDDcd001023.82E-4311395No hitNo description
CDDcd002049.85E-9482564No hitNo description
SuperFamilySSF484032.33E-13503606IPR020683Ankyrin repeat-containing domain
PfamPF136377.3E-10516568No hitNo description
Gene3DG3DSA:1.25.40.207.3E-14519611IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.194519579IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.927547579IPR002110Ankyrin repeat
SMARTSM002483.3E-4547576IPR002110Ankyrin repeat
SuperFamilySSF525406.11E-8671761IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.0066710732IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.309711740IPR000048IQ motif, EF-hand binding site
PfamPF006120.014712731IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0017733755IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.578734762IPR000048IQ motif, EF-hand binding site
PfamPF006120.002735755IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MQQQGLDVHK LQQVVKTRWL KPQEVLQILR NHDLFMVSHK PPQKPPSGSW FLFNRRVLRY  60
FRNDGYEWQK KKNGKTVNEA HERLKVDNVD ALNCYYARGD KNPTFQRRIY WMLDPAYEHI  120
VLVHYRDVLE GSISVSARND SSTSNQNGSA SRAEVHSSPG WTSEFVLPCP NSSSPGSAEE  180
VSSRTVTINN ETNRSGSDWI QHKAALRKLE MQLSLEDKED SNVLAEEVPT NIEHVIVPGI  240
QTGEPGSSAN FEDIFNVLDF SRDHTKENGT DPCPSAIDVL KNSDTWLEED QLEAILHPAS  300
MAPTENLWFN IHEVSPESAF SSEITKVIVL GDFLCNPSHS SLAMLFGDVK VPVEIIQQGA  360
IRCHTPCLNA GKVSMCLIDG NGKPCSEARE FEFHEKPTKS MVDGNEKPCN EAQDIKVHKT  420
PTKSNDELLL LLNYVQILFG HGCDVFSKFS PQLPNPGCGF LVNQMDIMRK TYEQLDPEKT  480
VYSVMEVLLN DKFKQWLLSK CEQNSDGNHL LPKQYHGVIH TIAALGYDLA LKPLLSSGVP  540
INYRDGNGWT ALHWAARFGR EDMVVALLTA GAAAGALSHP TSEDPAAKTP ASIALAFGFK  600
GLSAFLSEEQ LTTHLDSIES KENGKCEGNA SGGGIRSAVD RISDKSTHVH GGTDDQLALK  660
DSLGAVRNAV QAAARIQAAF RVFSFKKKKE TALQNSCLSV HETVAVSHGM LERAALSIQK  720
NFRCWKKRKE FLKLRKNVIK IQARVRAHQE RKKYKELIRS VGVLEKVMLR WYRKGVGLRG  780
FNSGAMPVDE EVEEDVAKVF RKLRVETAID EAVSRVSCII GSPKAMQQYR RMLQRYQQAK  840
VNIPKDASEV PTSKG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A2S3HNI70.0A0A2S3HNI7_9POAL; Uncharacterized protein
STRINGPavir.J03014.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-98Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains