PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00723.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 572aa    MW: 63543.6 Da    PI: 4.765
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00723.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.31.9e-1292025712374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+a+s+ +  +aq +++ l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P+++++++
  Pahal.E00723.1 202 KQLLFDCATALSEYNIDEAQVIISDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGNGIYKALTCKDPP---TLYQLSAMQILFEICPCFRLGFM 293
                     589*****************************************************************9...89999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aIlea +geer+HiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+++A+ +gv+fef++ v  +l d+
  Pahal.E00723.1 294 AANYAILEACKGEERLHIIDFDINQGSQYITLIQFLKNNANKPQHLRITGVDDPETVqrPIGGLKVIGQRLEQLAHDCGVSFEFRA-VGANLGDV 387
                     *******************************************************99878899***********************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yy+alfdsl+a+lpres +r++
  Pahal.E00723.1 388 TPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYAALFDSLDATLPRESPDRMN 482
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF++ p+++++ + +k++l+ + ++ y+ ee++g l +gW +++L++ SaW+
  Pahal.E00723.1 483 VERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTQCPFNSNVICGIKSVLKSYCDR-YKFEEDHGGLHFGWGKKTLIVSSAWQ 571
                     *************************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.888175552IPR005202Transcription factor GRAS
PfamPF035146.7E-127202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSFVRRADPS TAYTDNLYIH KFAAPSSNFA VRRFSSDTQL FRYGPEPYNG EYGHMGFTGS  60
PSAAFQNSFC SQQASLTPYH LTADGRSLSV ADTQSNSCSD AAKESPVASN VSQQNSQSVS  120
DTQSSEIEVE FDEDEIRLKL QELEHALLED GDEILFEISQ AGSINDEWAD PMKNVLLPNS  180
PKESESSISC AVSNSRATRT PKQLLFDCAT ALSEYNIDEA QVIISDLRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGNGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL  300
EACKGEERLH IIDFDINQGS QYITLIQFLK NNANKPQHLR ITGVDDPETV QRPIGGLKVI  360
GQRLEQLAHD CGVSFEFRAV GANLGDVTPA MLDCRPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYAALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFTQCPFNSN VICGIKSVLK  540
SYCDRYKFEE DHGGLHFGWG KKTLIVSSAW Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6020857025377Protein SCARECROW
5b3h_D2e-6020857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5347040.0EF534704.1 Aeluropus littoralis scarecrow gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2S3HPD70.0A0A2S3HPD7_9POAL; Uncharacterized protein
STRINGPavir.Ea03635.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]