PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00809.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 379aa    MW: 38527.9 Da    PI: 6.2297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00809.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-20155204255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Pahal.E00809.1 155 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 204
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.686155212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-33155213IPR001471AP2/ERF domain
PfamPF008471.2E-13155204IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22155213IPR016177DNA-binding domain
SMARTSM003801.3E-36155218IPR001471AP2/ERF domain
PRINTSPR003671.3E-11156167IPR001471AP2/ERF domain
CDDcd000181.81E-14163214No hitNo description
PRINTSPR003671.3E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCFELADQRG AQRAGAGAGA WPVKGGGGGQ QDERAAAGMA MAGVCPGEVM SEYHQARELS  60
TMVSALAHVV AGGPWGDEAP APRGSGGAPE QQAMHGGYVR EVGSYHHSAP SPEFAGSEQG  120
SDTQSAGAAA AAAAMEEHHA AALSGQEGPE TPRRRYRGVR QRPWGKWAAE IRDPHKAARV  180
WLGTFETAEA AARAYDEAAL RFRGSRAKLN FPEDARLHPA STAAAAPPAS APLAGAAAST  240
SPPGYHAGAA QGADYLRYQM LLQGATGNQG TLLPFYGGGG GMSNLYGGGG GAMSNPYGGG  300
GGGGGNTSGF LGSYYSFPPS SVSVATVPSS ASSASGYYYS SSYDSHQSES SAPASDWNWE  360
TSLLNWSDAG YPPPPHSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23156212663ATERF1
3gcc_A4e-23156212663ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816726.10.0glycine, alanine and asparagine-rich protein-like
TrEMBLA0A2S3HPU20.0A0A2S3HPU2_9POAL; Uncharacterized protein
STRINGPavir.J03755.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-19ethylene response factor 110