PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00814.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 270aa MW: 28273 Da PI: 9.8953

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00814.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.2	4.7e-15	187	236	3	52
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 + +r++r++kNRe+A rsR+RK+a+i+eLe+ v +Le+eN +L e ee Pahal.E00814.2 187 AMQRQKRMIKNRESAARSRERKQAYIAELETLVTQLEEENAELLREQEER 236 689*************************************9987766543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-9	185	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	187	235	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.3E-14	187	244	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.53E-19	189	239	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.5E-13	190	245	No hit	No description
SuperFamily	SSF57959	6.88E-11	190	237	No hit	No description
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MASSRVMPSS SPSHTASDLA RFAQAASRPG GGGGSGLGSM NVEELLRGIY SDMPTPATPA 60 PAADRPMPAA PAPAPGIAAR KTAEEVWKEI TTGVGSAGTA APVPQAVVPA GAGGGAGAGG 120 PEMTLEDFLA REGAVKEDEV RISGPSAPAE GQVVMGFLGG AEGVGVPGGG GGRGRKRQLM 180 DPVDRAAMQR QKRMIKNRES AARSRERKQA YIAELETLVT QLEEENAELL REQEERHQKR 240 LKELLERVTP VIVRKKPPQD LRRTNSMQW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816287.1	0.0	bZIP transcription factor 12
Swissprot	Q0JHF1	1e-101	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A2S3HPN1	0.0	A0A2S3HPN1_9POAL; Uncharacterized protein
STRING	Pavir.J05659.1.p	1e-136	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	4e-18	G-box binding factor 4

Link Out ? help Back to Top
Phytozome	Pahal.E00814.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]