PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00844.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 193aa    MW: 21652.8 Da    PI: 8.0418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00844.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-14125169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
   Pahal.E00844.1 125 PWSEEEHRLFLQGLEKYGRGDWRNISRFSVRTRTPTQVASHAQKY 169
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4931771IPR017877Myb-like domain
SMARTSM007170.0852173IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-102270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-52370IPR009057Homeodomain-like
CDDcd001670.002122562No hitNo description
PROSITE profilePS5129418.423118174IPR017930Myb domain
SuperFamilySSF466891.87E-17119173IPR009057Homeodomain-like
SMARTSM007173.6E-11122172IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-17122173IPR006447Myb domain, plants
CDDcd001674.56E-11125170No hitNo description
Gene3DG3DSA:1.10.10.603.7E-12125174IPR009057Homeodomain-like
PfamPF002499.3E-12125169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDFHHNHQQH SVRAAGPPAP AARPWSKAED KVFEGALVMW PEHAPDRWAL VAAQLPGRTP  60
REAWEHYEAL VADVDLIERG AVDVPTSWDD DDDSSSGGGG GEEGGPTRRA GPNRPRRESR  120
RPGIPWSEEE HRLFLQGLEK YGRGDWRNIS RFSVRTRTPT QVASHAQKYF NRQLNPASRD  180
SKRKSIHDIT TP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-152185771RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794360.0HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817656.11e-139transcription factor DIVARICATA-like
SwissprotQ8S9H72e-47DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HPP51e-137A0A2S3HPP5_9POAL; Uncharacterized protein
STRINGPavir.J02275.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-48Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]