PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00863.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 552aa MW: 59873.7 Da PI: 8.2322

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00863.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.6e-11	241	270	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Pahal.E00863.1 241 AKTERRLAQNREAARKSRLRKKAYVQQLET 270 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-8	238	314	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-7	240	284	No hit	No description
PROSITE profile	PS50217	9.243	240	284	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.1E-8	241	271	IPR004827	Basic-leucine zipper domain
CDD	cd14708	3.71E-20	242	294	No hit	No description
SuperFamily	SSF57959	8.44E-7	242	285	No hit	No description
PROSITE pattern	PS00036	0	245	260	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.5E-28	323	397	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MPRHFGWITP PPTHRNFLMP KACIPRVIWA PRSIGSTRLH LFASPSSLSA CPSAGALGGL 60 GDFQPAAAAA AYFGFGELEE ALIHGGGGGA SASTGGGVDP GVITRSDVAA QTKPAAAGYL 120 AGAGAGRPPT LEIFPSWPMR HQQQLHSGNS QSVGSTTDSS SAQNTMSQME LVSPASSAPR 180 QEVMMVTTDD YSYKPGLAAA APPSFQQQQQ HPPPLQLHGG GDHDKRKQGG SARKDGKLVD 240 AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQVEH ELQRARSQGL FVGGCSAAGD 300 MSSGAAMFDM EYARWLDDDS KRLAELRGGL QARLLDGNLG LIVEECMQHY DELFQLKAGL 360 ARADVFHLLT GSWATPAERC FFWMGGFRPS ELLKILIPQL DPLTEQQLLG ICNLQQSSEQ 420 AEEALAQGLH QLHQSLADTV AAGTLNDGAA APNYMSLMAV ALEKLASLES FYQQADNLRQ 480 QTLHQMRRIL TTRQAARCFL SIGEYYRRLR ALSNLWASRP RENFIGAESL SPTATELQAM 540 HQQQQNQFCG F*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MPRHFGWITP PPTHRNFLMP KACIPRVIWA PRSIGSTRLH LFASPSSLSA CPSAGALGGL  60
GDFQPAAAAA AYFGFGELEE ALIHGGGGGA SASTGGGVDP GVITRSDVAA QTKPAAAGYL  120
AGAGAGRPPT LEIFPSWPMR HQQQLHSGNS QSVGSTTDSS SAQNTMSQME LVSPASSAPR  180
QEVMMVTTDD YSYKPGLAAA APPSFQQQQQ HPPPLQLHGG GDHDKRKQGG SARKDGKLVD  240
AKTERRLAQN REAARKSRLR KKAYVQQLET SRIRLQQVEH ELQRARSQGL FVGGCSAAGD  300
MSSGAAMFDM EYARWLDDDS KRLAELRGGL QARLLDGNLG LIVEECMQHY DELFQLKAGL  360
ARADVFHLLT GSWATPAERC FFWMGGFRPS ELLKILIPQL DPLTEQQLLG ICNLQQSSEQ  420
AEEALAQGLH QLHQSLADTV AAGTLNDGAA APNYMSLMAV ALEKLASLES FYQQADNLRQ  480
QTLHQMRRIL TTRQAARCFL SIGEYYRRLR ALSNLWASRP RENFIGAESL SPTATELQAM  540
HQQQQNQFCG F*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818708.1	0.0	transcription factor LG2 isoform X1
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A2S3HPS5	0.0	A0A2S3HPS5_9POAL; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-134	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00863.1

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]