PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00863.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 535aa MW: 58077.6 Da PI: 7.4264

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00863.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.3	6e-12	223	253	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 +k err+++NReAAr+sR+RKka++++Le+ Pahal.E00863.4 223 HDKTERRLAQNREAARKSRLRKKAYVQQLET 253 589**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.8E-8	221	297	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-8	222	267	No hit	No description
PROSITE profile	PS50217	9.071	223	267	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.8E-9	224	254	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.50E-20	225	277	No hit	No description
SuperFamily	SSF57959	7.74E-7	225	268	No hit	No description
PROSITE pattern	PS00036	0	228	243	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.3E-28	306	380	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MPRHFGWITP PPTHRNFLMP KACIPRVIWA PRSIGSTRLH LFASPSSLSA CPSAGALGGL 60 GDFQPAAAAA AYFGFGELEE ALIHGGGGGA SASTGGGVDP GVITRSDVAA QTKPAAAGYL 120 AGAGAGRPPT LEIFPSWPMR HQQQLHSGNS QSVGSTTDSS SAQNTMSQME LVSPASSAPR 180 QEVMMVTTDD YSYKPGLAAA APPSFQQQQQ HPPPLQLHGG GDHDKTERRL AQNREAARKS 240 RLRKKAYVQQ LETSRIRLQQ VEHELQRARS QGLFVGGCSA AGDMSSGAAM FDMEYARWLD 300 DDSKRLAELR GGLQARLLDG NLGLIVEECM QHYDELFQLK AGLARADVFH LLTGSWATPA 360 ERCFFWMGGF RPSELLKILI PQLDPLTEQQ LLGICNLQQS SEQAEEALAQ GLHQLHQSLA 420 DTVAAGTLND GAAAPNYMSL MAVALEKLAS LESFYQQADN LRQQTLHQMR RILTTRQAAR 480 CFLSIGEYYR RLRALSNLWA SRPRENFIGA ESLSPTATEL QAMHQQQQNQ FCGF*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MPRHFGWITP PPTHRNFLMP KACIPRVIWA PRSIGSTRLH LFASPSSLSA CPSAGALGGL  60
GDFQPAAAAA AYFGFGELEE ALIHGGGGGA SASTGGGVDP GVITRSDVAA QTKPAAAGYL  120
AGAGAGRPPT LEIFPSWPMR HQQQLHSGNS QSVGSTTDSS SAQNTMSQME LVSPASSAPR  180
QEVMMVTTDD YSYKPGLAAA APPSFQQQQQ HPPPLQLHGG GDHDKTERRL AQNREAARKS  240
RLRKKAYVQQ LETSRIRLQQ VEHELQRARS QGLFVGGCSA AGDMSSGAAM FDMEYARWLD  300
DDSKRLAELR GGLQARLLDG NLGLIVEECM QHYDELFQLK AGLARADVFH LLTGSWATPA  360
ERCFFWMGGF RPSELLKILI PQLDPLTEQQ LLGICNLQQS SEQAEEALAQ GLHQLHQSLA  420
DTVAAGTLND GAAAPNYMSL MAVALEKLAS LESFYQQADN LRQQTLHQMR RILTTRQAAR  480
CFLSIGEYYR RLRALSNLWA SRPRENFIGA ESLSPTATEL QAMHQQQQNQ FCGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818709.1	0.0	transcription factor LG2 isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A2S3HPR4	0.0	A0A2S3HPR4_9POAL; Uncharacterized protein
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-130	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00863.4

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]