PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00863.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 504aa    MW: 54842.7 Da    PI: 7.1543
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00863.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.2e-11193222433
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                      k err+++NReAAr+sR+RKka++++Le+
  Pahal.E00863.5 193 AKTERRLAQNREAARKSRLRKKAYVQQLET 222
                     799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-8190266IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.243192236IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-7192236No hitNo description
PfamPF001704.5E-8193223IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-7194237No hitNo description
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
PfamPF141444.8E-28275349IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTDGLCVRYC SSRDFQPAAA AAAYFGFGEL EEALIHGGGG GASASTGGGV DPGVITRSDV  60
AAQTKPAAAG YLAGAGAGRP PTLEIFPSWP MRHQQQLHSG NSQSVGSTTD SSSAQNTMSQ  120
MELVSPASSA PRQEVMMVTT DDYSYKPGLA AAAPPSFQQQ QQHPPPLQLH GGGDHDKRKQ  180
GGSARKDGKL VDAKTERRLA QNREAARKSR LRKKAYVQQL ETSRIRLQQV EHELQRARSQ  240
GLFVGGCSAA GDMSSGAAMF DMEYARWLDD DSKRLAELRG GLQARLLDGN LGLIVEECMQ  300
HYDELFQLKA GLARADVFHL LTGSWATPAE RCFFWMGGFR PSELLKILIP QLDPLTEQQL  360
LGICNLQQSS EQAEEALAQG LHQLHQSLAD TVAAGTLNDG AAAPNYMSLM AVALEKLASL  420
ESFYQQADNL RQQTLHQMRR ILTTRQAARC FLSIGEYYRR LRALSNLWAS RPRENFIGAE  480
SLSPTATELQ AMHQQQQNQF CGF*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818708.10.0transcription factor LG2 isoform X1
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A2S3HPR70.0A0A2S3HPR7_9POAL; Uncharacterized protein
STRINGGRMZM2G060216_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-136bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]