PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00863.6
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 487aa    MW: 53046.6 Da    PI: 6.5714
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00863.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.55.3e-12175205333
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 
                      +k err+++NReAAr+sR+RKka++++Le+
  Pahal.E00863.6 175 HDKTERRLAQNREAARKSRLRKKAYVQQLET 205
                     589**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-8173249IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-8174219No hitNo description
PROSITE profilePS502179.071175219IPR004827Basic-leucine zipper domain
PfamPF001706.1E-9176206IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.89E-7177220No hitNo description
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
PfamPF141444.6E-28258332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MTDGLCVRYC SSRDFQPAAA AAAYFGFGEL EEALIHGGGG GASASTGGGV DPGVITRSDV  60
AAQTKPAAAG YLAGAGAGRP PTLEIFPSWP MRHQQQLHSG NSQSVGSTTD SSSAQNTMSQ  120
MELVSPASSA PRQEVMMVTT DDYSYKPGLA AAAPPSFQQQ QQHPPPLQLH GGGDHDKTER  180
RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQVEHELQRA RSQGLFVGGC SAAGDMSSGA  240
AMFDMEYARW LDDDSKRLAE LRGGLQARLL DGNLGLIVEE CMQHYDELFQ LKAGLARADV  300
FHLLTGSWAT PAERCFFWMG GFRPSELLKI LIPQLDPLTE QQLLGICNLQ QSSEQAEEAL  360
AQGLHQLHQS LADTVAAGTL NDGAAAPNYM SLMAVALEKL ASLESFYQQA DNLRQQTLHQ  420
MRRILTTRQA ARCFLSIGEY YRRLRALSNL WASRPRENFI GAESLSPTAT ELQAMHQQQQ  480
NQFCGF*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818709.10.0transcription factor LG2 isoform X2
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A2S3HQ970.0A0A2S3HQ97_9POAL; Uncharacterized protein
STRINGGRMZM2G060216_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-132bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]