PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00867.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 375aa MW: 41284.4 Da PI: 6.6819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00867.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.7e-06	221	240	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ Pahal.E00867.1 221 FICHVCNKTFNRYNNMQMHM 240 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.63E-5	217	244	No hit	No description
PROSITE profile	PS50157	10.201	221	248	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-5	221	240	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.61E-5	289	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MGLRACAMEG GEGVGSPFFQ WLKPRRPSSP SSSASMAASS WQQVVVLGEE GRAGGGVEEA 60 RSMACLPLLS RLGEGKGADD HHKQCSAVKE EIAMSGASSD LARSGVDLNI GLPVGGSCIE 120 DAVMEEKDEE EEEEEDNEVE EEEDDEDERE EEWKHQMHGG CKVEGMDQQH DNGEVVASAV 180 EGPNSNGLGE FGVVGAESGL PIGCRYWIPT PAQILIGPVQ FICHVCNKTF NRYNNMQMHM 240 WGHGREYRKG PESLKGTQTL AMLKLPCYCC APGCKNNVGH PRARPLKDFR TLQTHYKRKH 300 GAKPFRCRRC AKPFAVKGDW RTHEKNCGKR WFCACGSDFK HKRSLNDHVR SFGAHHHPVG 360 ESAAAGEVRR FRHI*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MGLRACAMEG GEGVGSPFFQ WLKPRRPSSP SSSASMAASS WQQVVVLGEE GRAGGGVEEA  60
RSMACLPLLS RLGEGKGADD HHKQCSAVKE EIAMSGASSD LARSGVDLNI GLPVGGSCIE  120
DAVMEEKDEE EEEEEDNEVE EEEDDEDERE EEWKHQMHGG CKVEGMDQQH DNGEVVASAV  180
EGPNSNGLGE FGVVGAESGL PIGCRYWIPT PAQILIGPVQ FICHVCNKTF NRYNNMQMHM  240
WGHGREYRKG PESLKGTQTL AMLKLPCYCC APGCKNNVGH PRARPLKDFR TLQTHYKRKH  300
GAKPFRCRRC AKPFAVKGDW RTHEKNCGKR WFCACGSDFK HKRSLNDHVR SFGAHHHPVG  360
ESAAAGEVRR FRHI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064334	0.0	AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819090.1	0.0	protein TRANSPARENT TESTA 1-like
TrEMBL	A0A2S3HPS7	0.0	A0A2S3HPS7_9POAL; Uncharacterized protein
STRING	Pavir.J31116.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	7e-95	WIP domain protein 5

Link Out ? help Back to Top
Phytozome	Pahal.E00867.1