PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00900.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 215aa    MW: 24139 Da    PI: 8.6352
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-201172157
                    TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++ R+++t+eq+++L elF+   r+p+++++++++++l    +++ ++V++WFqN++a+e++
  Pahal.E00900.1 11 KCGRWNPTAEQVKVLTELFRAgLRTPTTDQIQRISTHLsafgKVESKNVFYWFQNHKARERH 72
                    568*****************99**************************************95 PP
2Wus_type_Homeobox110.96.9e-361273364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       + RW+Pt+eQ+k+L+el+++GlrtP++++iqri+++L+++Gk+e+kNVfyWFQN+kaRer++
     Pahal.E00900.1 12 CGRWNPTAEQVKVLTELFRAGLRTPTTDQIQRISTHLSAFGKVESKNVFYWFQNHKARERHH 73
                       78**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.6E-41077IPR001356Homeobox domain
PfamPF000463.9E-171272IPR001356Homeobox domain
SuperFamilySSF466891.8E-111376IPR009057Homeodomain-like
CDDcd000867.17E-41474No hitNo description
Gene3DG3DSA:1.10.10.603.6E-71471IPR009057Homeodomain-like
PROSITE profilePS500719.8961873IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEALSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPTTDQ IQRISTHLSA FGKVESKNVF  60
YWFQNHKARE RHHHKKRRRG ASSPDSGSGS GSGNEEDGRA ASREPAAEAP DLVLQPPESK  120
REARSYSHHH HRLLTCYVRD VVEQQAAEAL WERPTREVET LELFPLKSYV DLEAETKVRY  180
VRSGAASEQC REFSFDVAGG RDPPLELRLC SFGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697170.0EU969717.1 Zea mays clone 334641 WUSCHEL-related homeobox 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818160.11e-158WUSCHEL-related homeobox 9-like
SwissprotQ8W0F11e-118WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLA0A2S3HPW41e-156A0A2S3HPW4_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEA21e-156A0A2T7DEA2_9POAL; Uncharacterized protein
STRINGPavir.J34036.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94113643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.11e-32WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  3. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  4. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  5. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]