PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00994.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 852aa MW: 93235.8 Da PI: 6.2418

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00994.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	393.2	2.8e-120	475	844	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++lL++cA+ v+++d + a++lL++++++asp+gd qRla +f+++L+arla+++s++yk++ +++ + +++l+a++l+ ++P+ k+sh+ Pahal.E00994.1 475 ETLLIHCAQSVATDDRRGATELLKQIRQHASPNGDGDQRLAYCFANGLEARLAGNGSQIYKSVIMTRFP---CTDVLKAYQLYLAACPFKKISHF 566 789***********************************************************99999...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ + +r+e++ Pahal.E00994.1 567 FANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRPGGPPRLRITGIDTPHPGfrPAERIEETGRYLKDYAQTFNVPFEFQA-IPSRFEAV 660 ***************************************************99*************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E l+Vn++++ ++l++esv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +ysa+fd+le+++pr++e+r Pahal.E00994.1 661 KIEDLHIEKDELLIVNCMFRFKTLMEESVVAESPRNMVLNTIRKMNPHVFIHGVVNGSYNAPFFVSRFREALFHYSAIFDMLETNIPRDNEQRLL 755 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E +l+gre++nv++ceg er er et+++W+ r ++aGFk++p++++++k a+ +r ++ d + ++e++++l++gWk+r L+++S W+ Pahal.E00994.1 756 IETALFGREAMNVISCEGLERMERPETYKQWQVRNQRAGFKQLPMNQDIMKRAREKVRCYHRD-FIIDEDNKWLLQGWKGRILLALSTWK 844 ********************************************************966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.938	448	825	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-118	475	844	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MVMDAGLHEL CALLPGSNKR DGHLPIYPQI PAAATRFTAE DLESLLFLPH DGIAAAAGVG 60 GGYLNVAPTT VVPPASTNRA SPPRDAAAAA AAAAGVGVGY LNVASMTVVP PAPTNRVPPP 120 SDAEAAAAPA AAGQPDDSEA FSDIVLAYIN RMLMAEDIDD KFDHYPEHSV LLAAEKPFLE 180 ILADQPASSG GSAVESPDGS SVTNSCSSLG SCSCGAAASD GFGAVRTPAL DFPSAAFLQP 240 PQLYQDLSPE SGVVDAGGPW PYDPTEFYQL QANPVAEALL SQSPSFASSN CSGIASSDGF 300 ESLSLSGVMP DVGLTDFAVQ SQQAMQFCRG LEEASRFLPE ESKLVIDLEK STSVTRLVAN 360 VKEEKRFAEV KTEKADVEAA IHRGKKHFYG DDLDAEEGRC SKHSAAAIDP DHLVREMMDK 420 VLLCNGETCS KGVKELREAL QHDVAKHSHG GHGKGPGHGK GRGKKQPKKE VIDLETLLIH 480 CAQSVATDDR RGATELLKQI RQHASPNGDG DQRLAYCFAN GLEARLAGNG SQIYKSVIMT 540 RFPCTDVLKA YQLYLAACPF KKISHFFANQ TIMNAVEKAK KVHIVDYGIY YGFQWPCLIQ 600 RLSTRPGGPP RLRITGIDTP HPGFRPAERI EETGRYLKDY AQTFNVPFEF QAIPSRFEAV 660 KIEDLHIEKD ELLIVNCMFR FKTLMEESVV AESPRNMVLN TIRKMNPHVF IHGVVNGSYN 720 APFFVSRFRE ALFHYSAIFD MLETNIPRDN EQRLLIETAL FGREAMNVIS CEGLERMERP 780 ETYKQWQVRN QRAGFKQLPM NQDIMKRARE KVRCYHRDFI IDEDNKWLLQ GWKGRILLAL 840 STWKPDRKSS P*

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MVMDAGLHEL CALLPGSNKR DGHLPIYPQI PAAATRFTAE DLESLLFLPH DGIAAAAGVG  60
GGYLNVAPTT VVPPASTNRA SPPRDAAAAA AAAAGVGVGY LNVASMTVVP PAPTNRVPPP  120
SDAEAAAAPA AAGQPDDSEA FSDIVLAYIN RMLMAEDIDD KFDHYPEHSV LLAAEKPFLE  180
ILADQPASSG GSAVESPDGS SVTNSCSSLG SCSCGAAASD GFGAVRTPAL DFPSAAFLQP  240
PQLYQDLSPE SGVVDAGGPW PYDPTEFYQL QANPVAEALL SQSPSFASSN CSGIASSDGF  300
ESLSLSGVMP DVGLTDFAVQ SQQAMQFCRG LEEASRFLPE ESKLVIDLEK STSVTRLVAN  360
VKEEKRFAEV KTEKADVEAA IHRGKKHFYG DDLDAEEGRC SKHSAAAIDP DHLVREMMDK  420
VLLCNGETCS KGVKELREAL QHDVAKHSHG GHGKGPGHGK GRGKKQPKKE VIDLETLLIH  480
CAQSVATDDR RGATELLKQI RQHASPNGDG DQRLAYCFAN GLEARLAGNG SQIYKSVIMT  540
RFPCTDVLKA YQLYLAACPF KKISHFFANQ TIMNAVEKAK KVHIVDYGIY YGFQWPCLIQ  600
RLSTRPGGPP RLRITGIDTP HPGFRPAERI EETGRYLKDY AQTFNVPFEF QAIPSRFEAV  660
KIEDLHIEKD ELLIVNCMFR FKTLMEESVV AESPRNMVLN TIRKMNPHVF IHGVVNGSYN  720
APFFVSRFRE ALFHYSAIFD MLETNIPRDN EQRLLIETAL FGREAMNVIS CEGLERMERP  780
ETYKQWQVRN QRAGFKQLPM NQDIMKRARE KVRCYHRDFI IDEDNKWLLQ GWKGRILLAL  840
STWKPDRKSS P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-55	478	844	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816495.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2T7DEJ9	0.0	A0A2T7DEJ9_9POAL; Uncharacterized protein
STRING	Pavir.Eb03680.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-178	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00994.1