PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01021.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 188aa    MW: 19588.6 Da    PI: 5.9697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01021.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00115981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+F++   L  H  +H
  Pahal.E01021.1 59 FECKTCSKRFPSFQALGGHRTSH 81
                    89**********99998888777 PP
2zf-C2H211.90.00068105127123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  Cg  Fs    L  H+r+H
  Pahal.E01021.1 105 HECAVCGLEFSMGQALGGHMRRH 127
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.14E-65683No hitNo description
PfamPF139124.2E-125881IPR007087Zinc finger, C2H2
SMARTSM003550.185981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4295986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SuperFamilySSF576678.23E-7102133No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4103132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.2E-11104129IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.217105132IPR007087Zinc finger, C2H2
SMARTSM003550.89105127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTLTRHEAEE SKEMEGLRAH AVALLSLSSS PEPAASGGGD SRPPASASSR RAMAAEGVFE  60
CKTCSKRFPS FQALGGHRTS HTRLQARMLS DAAAAGAERD RTRVHECAVC GLEFSMGQAL  120
GGHMRRHRGE APLAAHDDGA AHPDQAMPDL NFPPLEDGDG GGGSDGGQDQ QPSADHSSEP  180
QLLNLLV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711161e-101EU971116.1 Zea mays clone 357761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.11e-131zinc finger protein ZAT12-like
TrEMBLA0A2S3HQN81e-130A0A2S3HQN8_9POAL; Uncharacterized protein
STRINGPavir.J14338.1.p4e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-24C2H2 family protein