PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01062.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 457aa    MW: 51439.7 Da    PI: 7.0056
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01062.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06182205226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C+ G +CkF+H+
  Pahal.E01062.1 182 KSILCEFFKA-GQCQKGFKCKFSHD 205
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.272180207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6180205IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5180206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4182205IPR000571Zinc finger, CCCH-type
SMARTSM003564.3250287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953250288IPR000571Zinc finger, CCCH-type
PfamPF165431.1E-15307387IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MARPKAQRAR QEALTGRPNI HNHHPIPFPH IATNFLLASA SASGFPFLTG SPKPTKPSSP  60
SLAAASSSSR HPLPNPTRPS RQRESEPRDR MPPKKAAPSK AELAKKQKVV EDKTFGLKNK  120
NKSKNVQKYV QSLHQAVQPK PDPTKTAAKK KKEEEKAREK ELNDLFKVAV SQPKVPVGVD  180
PKSILCEFFK AGQCQKGFKC KFSHDLNVQR KGEKIDIYTD KRDAETMEDW DQETLEKVVE  240
SKKTEYQQNK PTDIVCKYFL DAVEKKQYGW FWVCPNGGKD CHYRHALPPG YILKSQMKAL  300
LEEESEKIAI EDEIEDQRKK TKTTTPMTTE LFMEWKRKKA EEREAGQAAL KAERAKNDRM  360
SGRELFMADA SVFVDDAEAY EVYEREEESE ANAESSKKSQ DAGPSSSTSN GKEVEEPDDE  420
DIDVDDDLDI DELNELEASL SRTSIQIREP GEGTSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317338RKKTKTTTPMTTELFMEWKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628980.0EU962898.1 Zea mays clone 246367 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819476.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2T7DET40.0A0A2T7DET4_9POAL; Uncharacterized protein
TrEMBLA0A2T8IJJ10.0A0A2T8IJJ1_9POAL; Uncharacterized protein
STRINGPavir.J15145.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-139C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]