PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01063.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 164aa    MW: 17754.8 Da    PI: 6.1185
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01063.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.93e-5816112197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+yveplk+yl+kyre+eg
  Pahal.E01063.1  16 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYVEPLKMYLQKYREMEG 110
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  Pahal.E01063.1 111 DS 112
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5414121IPR009072Histone-fold
SuperFamilySSF471132.17E-4019115IPR009072Histone-fold
PfamPF008081.2E-282286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-235068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-236987No hitNo description
PRINTSPR006153.8E-2388106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MADDGGSHEG GGGGGVREQD RFLPIANISR IMKKAVPANG KIAKDAKETL QECVSEFISF  60
VTSEASDKCQ KEKRKTINGD DLLWAMATLG FEEYVEPLKM YLQKYREMEG DSKLSTKAGE  120
GSVKKDAISP HGGTSSSSNQ LVQHGVYNQG MGYMQPQYHN GDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4915107193NF-YB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9757580.0EU975758.1 Zea mays clone 499728 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816143.11e-120nuclear transcription factor Y subunit B-3-like
SwissprotP252093e-90NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A2S3HQA21e-118A0A2S3HQA2_9POAL; Uncharacterized protein
TrEMBLA0A2T7DEX31e-118A0A2T7DEX3_9POAL; Uncharacterized protein
STRINGSi003159m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.13e-70nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]